RNA–Protein interactions for RNA: ENST00000470278.5

CDC42SE1-203, Transcript of CDC42 small effector 1, humanhuman

TSL 5

Gene CDC42SE1, Length 939 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-203ENST00000470278 NISCHQ9Y2I1 1504 aa35.94■■■■□ 3.34
CDC42SE1-203ENST00000470278 CCDC180Q9P1Z9 1646 aa32.2■■■□□ 2.75
CDC42SE1-203ENST00000470278 ABCC9O60706 1549 aa32.16■■■□□ 2.74
CDC42SE1-203ENST00000470278 RB1CC1Q8TDY2 1594 aa30.57■■■□□ 2.48
CDC42SE1-203ENST00000470278 NACADO15069 1562 aa30.35■■■□□ 2.45
CDC42SE1-203ENST00000470278 DNAJC5BQ9UF47 199 aa30.32■■■□□ 2.44
CDC42SE1-203ENST00000470278 UNC13AQ9UPW8 1703 aa30.16■■■□□ 2.42
CDC42SE1-203ENST00000470278 ZCCHC6Q5VYS8 1495 aaKnown RBP30.06■■■□□ 2.4
CDC42SE1-203ENST00000470278 MYO15BQ96JP2 1530 aa29.94■■■□□ 2.38
CDC42SE1-203ENST00000470278 BICRAQ9NZM4 1560 aa29.89■■■□□ 2.38
CDC42SE1-203ENST00000470278 DCAF8L2P0C7V8 631 aa29.85■■■□□ 2.37
CDC42SE1-203ENST00000470278 DCAF1Q9Y4B6 1507 aa29.85■■■□□ 2.37
CDC42SE1-203ENST00000470278 PABPN1Q86U42 306 aaKnown RBP eCLIP29.84■■■□□ 2.37
CDC42SE1-203ENST00000470278 SHROOM4Q9ULL8 1493 aa29.29■■■□□ 2.28
CDC42SE1-203ENST00000470278 SCRIBQ14160 1630 aa29.29■■■□□ 2.28
CDC42SE1-203ENST00000470278 CC2D2AQ9P2K1 1620 aa29.13■■■□□ 2.25
CDC42SE1-203ENST00000470278 EIF4G1Q04637 1599 aaKnown RBP29.04■■■□□ 2.24
CDC42SE1-203ENST00000470278 CECR2Q9BXF3 1484 aa28.96■■■□□ 2.23
CDC42SE1-203ENST00000470278 NCAPD3P42695 1498 aa28.02■■■□□ 2.08
CDC42SE1-203ENST00000470278 SMARCA4P51532 1647 aa27.96■■■□□ 2.07
CDC42SE1-203ENST00000470278 ATAD2BQ9ULI0 1458 aa27.95■■■□□ 2.06
CDC42SE1-203ENST00000470278 HMGXB3Q12766 1538 aa27.87■■■□□ 2.05
CDC42SE1-203ENST00000470278 BAZ1AQ9NRL2 1556 aaPredicted RBP27.86■■■□□ 2.05
CDC42SE1-203ENST00000470278 SMARCA2P51531 1590 aa27.82■■■□□ 2.04
CDC42SE1-203ENST00000470278 DNAJC5Q9H3Z4 198 aa27.76■■■□□ 2.03
CDC42SE1-203ENST00000470278 CUX2O14529 1486 aa27.73■■■□□ 2.03
CDC42SE1-203ENST00000470278 PEG3Q9GZU2 1588 aa27.71■■■□□ 2.03
CDC42SE1-203ENST00000470278 NESP48681 1621 aa27.69■■■□□ 2.02
CDC42SE1-203ENST00000470278 MROH2BQ7Z745 1585 aa27.67■■■□□ 2.02
CDC42SE1-203ENST00000470278 ERCC6Q03468 1493 aa27.64■■■□□ 2.02
CDC42SE1-203ENST00000470278 BAZ1BQ9UIG0 1483 aaKnown RBP27.6■■■□□ 2.01
CDC42SE1-203ENST00000470278 THOC2Q8NI27 1593 aaKnown RBP27.52■■■□□ 2
CDC42SE1-203ENST00000470278 RSF1Q96T23 1441 aaPredicted RBP27.46■■□□□ 1.99
CDC42SE1-203ENST00000470278 LAMC3Q9Y6N6 1575 aa27.41■■□□□ 1.98
CDC42SE1-203ENST00000470278 KIF21AQ7Z4S6 1674 aa27.4■■□□□ 1.98
CDC42SE1-203ENST00000470278 WIZO95785 1651 aa27.4■■□□□ 1.98
CDC42SE1-203ENST00000470278 TOP2AP11388 1531 aaKnown RBP27.18■■□□□ 1.94
CDC42SE1-203ENST00000470278 PDS5BQ9NTI5 1447 aa27.11■■□□□ 1.93
CDC42SE1-203ENST00000470278 CADPSQ9ULU8 1353 aa27.09■■□□□ 1.93
CDC42SE1-203ENST00000470278 WDR62O43379 1518 aa27.03■■□□□ 1.92
CDC42SE1-203ENST00000470278 MRC2Q9UBG0 1479 aa27■■□□□ 1.91
CDC42SE1-203ENST00000470278 CFTRP13569 1480 aa26.85■■□□□ 1.89
CDC42SE1-203ENST00000470278 CEP164Q9UPV0 1460 aa26.85■■□□□ 1.89
CDC42SE1-203ENST00000470278 FANCD2Q9BXW9 1451 aa26.83■■□□□ 1.89
CDC42SE1-203ENST00000470278 SUPT5HO00267 1087 aaKnown RBP26.82■■□□□ 1.88
CDC42SE1-203ENST00000470278 CCDC88BA6NC98 1476 aa26.78■■□□□ 1.88
CDC42SE1-203ENST00000470278 PRDM2Q13029 1718 aa26.73■■□□□ 1.87
CDC42SE1-203ENST00000470278 URB2Q14146 1524 aaKnown RBP26.72■■□□□ 1.87
CDC42SE1-203ENST00000470278 ZNF608Q9ULD9 1512 aaPredicted RBP26.39■■□□□ 1.82
CDC42SE1-203ENST00000470278 TRIM41Q8WV44 630 aa26.39■■□□□ 1.82
CDC42SE1-203ENST00000470278 TOPBP1Q92547 1522 aa26.37■■□□□ 1.81
CDC42SE1-203ENST00000470278 IFT140Q96RY7 1462 aa26.3■■□□□ 1.8
CDC42SE1-203ENST00000470278 EIF4G3O43432 1585 aaKnown RBP26.28■■□□□ 1.8
CDC42SE1-203ENST00000470278 OSCARQ8IYS5 282 aa26.27■■□□□ 1.8
CDC42SE1-203ENST00000470278 DNMBPQ6XZF7 1577 aa26.27■■□□□ 1.8
CDC42SE1-203ENST00000470278 TARBP1Q13395 1621 aaKnown RBP26.24■■□□□ 1.79
CDC42SE1-203ENST00000470278 RIMBP3CA6NJZ7 1639 aa26.23■■□□□ 1.79
CDC42SE1-203ENST00000470278 RIMBP3BA6NNM3 1639 aa26.23■■□□□ 1.79
CDC42SE1-203ENST00000470278 RIMBP3Q9UFD9 1639 aa26.23■■□□□ 1.79
CDC42SE1-203ENST00000470278 ABCC8Q09428 1581 aa26.15■■□□□ 1.78
CDC42SE1-203ENST00000470278 CHD1O14646 1710 aa26.14■■□□□ 1.78
CDC42SE1-203ENST00000470278 POLA1P09884 1462 aaPredicted RBP26.1■■□□□ 1.77
CDC42SE1-203ENST00000470278 ARHGEF11O15085 1522 aa26.09■■□□□ 1.77
CDC42SE1-203ENST00000470278 AQRO60306 1485 aaKnown RBP eCLIP26.05■■□□□ 1.761e-6■■□□□ 12.2
CDC42SE1-203ENST00000470278 RAD54L2Q9Y4B4 1467 aa25.98■■□□□ 1.75
CDC42SE1-203ENST00000470278 CUX1P39880 1505 aa25.96■■□□□ 1.75
CDC42SE1-203ENST00000470278 FGD5Q6ZNL6 1462 aa25.91■■□□□ 1.74
CDC42SE1-203ENST00000470278 WDR97A6NE52 1622 aa25.9■■□□□ 1.74
CDC42SE1-203ENST00000470278 WRNQ14191 1432 aaPredicted RBP eCLIP25.88■■□□□ 1.73
CDC42SE1-203ENST00000470278 BIVM-ERCC5R4GMW8 1640 aa25.88■■□□□ 1.73
CDC42SE1-203ENST00000470278 ARAP1Q96P48 1450 aa25.86■■□□□ 1.73
CDC42SE1-203ENST00000470278 TOP2BQ02880 1626 aa25.86■■□□□ 1.73
CDC42SE1-203ENST00000470278 SYNJ1O43426 1573 aa25.84■■□□□ 1.73
CDC42SE1-203ENST00000470278 SOGA1O94964 1423 aa25.84■■□□□ 1.73
CDC42SE1-203ENST00000470278 TDRD9Q8NDG6 1382 aaKnown RBP25.83■■□□□ 1.73
CDC42SE1-203ENST00000470278 CLASP1Q7Z460 1538 aa25.82■■□□□ 1.72
CDC42SE1-203ENST00000470278 SNAPC4Q5SXM2 1469 aa25.81■■□□□ 1.72
CDC42SE1-203ENST00000470278 PBRM1Q86U86 1689 aa25.74■■□□□ 1.71
CDC42SE1-203ENST00000470278 MAGI1Q96QZ7 1491 aaPredicted RBP25.71■■□□□ 1.71
CDC42SE1-203ENST00000470278 ABCA5Q8WWZ7 1642 aa25.68■■□□□ 1.7
CDC42SE1-203ENST00000470278 CYB5RLQ6IPT4 315 aa25.68■■□□□ 1.7
CDC42SE1-203ENST00000470278 GRIN2BQ13224 1484 aa25.67■■□□□ 1.7
CDC42SE1-203ENST00000470278 FBLN2P98095 1184 aa25.67■■□□□ 1.7
CDC42SE1-203ENST00000470278 SYNJ2O15056 1496 aa25.62■■□□□ 1.69
CDC42SE1-203ENST00000470278 ABCA10Q8WWZ4 1543 aa25.62■■□□□ 1.69
CDC42SE1-203ENST00000470278 GAPVD1Q14C86 1478 aa25.58■■□□□ 1.69
CDC42SE1-203ENST00000470278 CHMP7Q8WUX9 453 aaPredicted RBP25.49■■□□□ 1.67
CDC42SE1-203ENST00000470278 ADAMTS12P58397 1594 aa25.47■■□□□ 1.67
CDC42SE1-203ENST00000470278 ERCC6L2Q5T890 1561 aa25.44■■□□□ 1.66
CDC42SE1-203ENST00000470278 CEP170Q5SW79 1584 aa25.4■■□□□ 1.66
CDC42SE1-203ENST00000470278 GRIN2AQ12879 1464 aa25.4■■□□□ 1.66
CDC42SE1-203ENST00000470278 SHROOM2Q13796 1616 aa25.35■■□□□ 1.65
CDC42SE1-203ENST00000470278 NUP160Q12769 1436 aa25.35■■□□□ 1.65
CDC42SE1-203ENST00000470278 ERICH3Q5RHP9 1530 aa25.33■■□□□ 1.65
CDC42SE1-203ENST00000470278 TRHP20396 242 aaPredicted RBP25.33■■□□□ 1.65
CDC42SE1-203ENST00000470278 KIF27Q86VH2 1401 aa25.32■■□□□ 1.64
CDC42SE1-203ENST00000470278 CHIC1Q5VXU3 224 aa25.27■■□□□ 1.64
CDC42SE1-203ENST00000470278 FHAD1B1AJZ9 1412 aa25.23■■□□□ 1.63
CDC42SE1-203ENST00000470278 CUL7Q14999 1698 aa25.19■■□□□ 1.62
CDC42SE1-203ENST00000470278 IGF1RP08069 1367 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms