RNA–Protein interactions for RNA: ENST00000582648.5

ERBB2-211, Transcript of erb-b2 receptor tyrosine kinase 2, humanhuman

TSL 5

Gene ERBB2, Length 1,013 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB2-211ENST00000582648 NISCHQ9Y2I1 1504 aa44.02■■■■■ 4.64
ERBB2-211ENST00000582648 CCDC180Q9P1Z9 1646 aa39.23■■■■□ 3.87
ERBB2-211ENST00000582648 ABCC9O60706 1549 aa38.55■■■■□ 3.76
ERBB2-211ENST00000582648 RB1CC1Q8TDY2 1594 aa36.97■■■■□ 3.51
ERBB2-211ENST00000582648 DCAF8L2P0C7V8 631 aa36.87■■■■□ 3.49
ERBB2-211ENST00000582648 NACADO15069 1562 aa36.86■■■■□ 3.49
ERBB2-211ENST00000582648 ZCCHC6Q5VYS8 1495 aaKnown RBP36.67■■■■□ 3.46
ERBB2-211ENST00000582648 MYO15BQ96JP2 1530 aa36.52■■■■□ 3.44
ERBB2-211ENST00000582648 DCAF1Q9Y4B6 1507 aa36.35■■■■□ 3.41
ERBB2-211ENST00000582648 UNC13AQ9UPW8 1703 aa36.24■■■■□ 3.39
ERBB2-211ENST00000582648 PABPN1Q86U42 306 aaKnown RBP eCLIP35.97■■■■□ 3.35
ERBB2-211ENST00000582648 SCRIBQ14160 1630 aa35.88■■■■□ 3.33
ERBB2-211ENST00000582648 BICRAQ9NZM4 1560 aa35.87■■■■□ 3.33
ERBB2-211ENST00000582648 DNAJC5BQ9UF47 199 aa35.4■■■■□ 3.26
ERBB2-211ENST00000582648 SHROOM4Q9ULL8 1493 aa35.39■■■■□ 3.26
ERBB2-211ENST00000582648 EIF4G1Q04637 1599 aaKnown RBP34.95■■■■□ 3.18
ERBB2-211ENST00000582648 CC2D2AQ9P2K1 1620 aa34.85■■■■□ 3.17
ERBB2-211ENST00000582648 CECR2Q9BXF3 1484 aa34.61■■■■□ 3.13
ERBB2-211ENST00000582648 SMARCA4P51532 1647 aa34.24■■■■□ 3.07
ERBB2-211ENST00000582648 BAZ1AQ9NRL2 1556 aaPredicted RBP34.14■■■■□ 3.06
ERBB2-211ENST00000582648 ATAD2BQ9ULI0 1458 aa34.02■■■■□ 3.04
ERBB2-211ENST00000582648 SMARCA2P51531 1590 aa33.98■■■■□ 3.03
ERBB2-211ENST00000582648 NCAPD3P42695 1498 aa33.97■■■■□ 3.03
ERBB2-211ENST00000582648 MROH2BQ7Z745 1585 aa33.97■■■■□ 3.03
ERBB2-211ENST00000582648 HMGXB3Q12766 1538 aa33.86■■■■□ 3.01
ERBB2-211ENST00000582648 PEG3Q9GZU2 1588 aa33.83■■■■□ 3.01
ERBB2-211ENST00000582648 BAZ1BQ9UIG0 1483 aaKnown RBP33.78■■■■□ 3
ERBB2-211ENST00000582648 WIZO95785 1651 aa33.64■■■□□ 2.98
ERBB2-211ENST00000582648 RSF1Q96T23 1441 aaPredicted RBP33.48■■■□□ 2.95
ERBB2-211ENST00000582648 NESP48681 1621 aa33.32■■■□□ 2.92
ERBB2-211ENST00000582648 ERCC6Q03468 1493 aa33.24■■■□□ 2.91
ERBB2-211ENST00000582648 TOP2AP11388 1531 aaKnown RBP33.23■■■□□ 2.91
ERBB2-211ENST00000582648 LAMC3Q9Y6N6 1575 aa33.16■■■□□ 2.9
ERBB2-211ENST00000582648 CADPSQ9ULU8 1353 aa32.99■■■□□ 2.87
ERBB2-211ENST00000582648 KIF21AQ7Z4S6 1674 aa32.98■■■□□ 2.87
ERBB2-211ENST00000582648 PDS5BQ9NTI5 1447 aa32.9■■■□□ 2.86
ERBB2-211ENST00000582648 THOC2Q8NI27 1593 aaKnown RBP32.86■■■□□ 2.85
ERBB2-211ENST00000582648 CUX2O14529 1486 aa32.85■■■□□ 2.85
ERBB2-211ENST00000582648 CCDC88BA6NC98 1476 aa32.8■■■□□ 2.84
ERBB2-211ENST00000582648 CFTRP13569 1480 aa32.79■■■□□ 2.84
ERBB2-211ENST00000582648 FANCD2Q9BXW9 1451 aa32.68■■■□□ 2.82
ERBB2-211ENST00000582648 CEP164Q9UPV0 1460 aa32.67■■■□□ 2.82
ERBB2-211ENST00000582648 PRDM2Q13029 1718 aa32.65■■■□□ 2.82
ERBB2-211ENST00000582648 MRC2Q9UBG0 1479 aa32.63■■■□□ 2.81
ERBB2-211ENST00000582648 SUPT5HO00267 1087 aaKnown RBP32.6■■■□□ 2.81
ERBB2-211ENST00000582648 WDR62O43379 1518 aa32.54■■■□□ 2.8
ERBB2-211ENST00000582648 URB2Q14146 1524 aaKnown RBP32.37■■■□□ 2.77
ERBB2-211ENST00000582648 TOPBP1Q92547 1522 aa32.15■■■□□ 2.74
ERBB2-211ENST00000582648 DNMBPQ6XZF7 1577 aa32.11■■■□□ 2.73
ERBB2-211ENST00000582648 ABCC8Q09428 1581 aa32.04■■■□□ 2.72
ERBB2-211ENST00000582648 IFT140Q96RY7 1462 aa31.95■■■□□ 2.7
ERBB2-211ENST00000582648 DNAJC5Q9H3Z4 198 aa31.92■■■□□ 2.7
ERBB2-211ENST00000582648 CUX1P39880 1505 aa31.88■■■□□ 2.69
ERBB2-211ENST00000582648 ZNF608Q9ULD9 1512 aaPredicted RBP31.87■■■□□ 2.69
ERBB2-211ENST00000582648 POLA1P09884 1462 aaPredicted RBP31.87■■■□□ 2.69
ERBB2-211ENST00000582648 TARBP1Q13395 1621 aaKnown RBP31.82■■■□□ 2.68
ERBB2-211ENST00000582648 FGD5Q6ZNL6 1462 aa31.79■■■□□ 2.68
ERBB2-211ENST00000582648 EIF4G3O43432 1585 aaKnown RBP31.78■■■□□ 2.68
ERBB2-211ENST00000582648 RAD54L2Q9Y4B4 1467 aa31.75■■■□□ 2.67
ERBB2-211ENST00000582648 SOGA1O94964 1423 aa31.69■■■□□ 2.66
ERBB2-211ENST00000582648 AQRO60306 1485 aaKnown RBP eCLIP31.65■■■□□ 2.669e-7■■■□□ 19
ERBB2-211ENST00000582648 SYNJ1O43426 1573 aa31.6■■■□□ 2.65
ERBB2-211ENST00000582648 WRNQ14191 1432 aaPredicted RBP eCLIP31.59■■■□□ 2.65
ERBB2-211ENST00000582648 WDR97A6NE52 1622 aa31.58■■■□□ 2.65
ERBB2-211ENST00000582648 BIVM-ERCC5R4GMW8 1640 aa31.58■■■□□ 2.65
ERBB2-211ENST00000582648 TDRD9Q8NDG6 1382 aaKnown RBP31.56■■■□□ 2.64
ERBB2-211ENST00000582648 TOP2BQ02880 1626 aa31.56■■■□□ 2.64
ERBB2-211ENST00000582648 CHD1O14646 1710 aa31.44■■■□□ 2.62
ERBB2-211ENST00000582648 ABCA10Q8WWZ4 1543 aa31.43■■■□□ 2.62
ERBB2-211ENST00000582648 OSCARQ8IYS5 282 aa31.42■■■□□ 2.62
ERBB2-211ENST00000582648 PBRM1Q86U86 1689 aa31.4■■■□□ 2.62
ERBB2-211ENST00000582648 SNAPC4Q5SXM2 1469 aa31.39■■■□□ 2.62
ERBB2-211ENST00000582648 ABCA5Q8WWZ7 1642 aa31.38■■■□□ 2.61
ERBB2-211ENST00000582648 GRIN2BQ13224 1484 aa31.35■■■□□ 2.61
ERBB2-211ENST00000582648 GAPVD1Q14C86 1478 aa31.35■■■□□ 2.61
ERBB2-211ENST00000582648 FBLN2P98095 1184 aa31.3■■■□□ 2.6
ERBB2-211ENST00000582648 MAGI1Q96QZ7 1491 aaPredicted RBP31.28■■■□□ 2.6
ERBB2-211ENST00000582648 SYNJ2O15056 1496 aa31.17■■■□□ 2.58
ERBB2-211ENST00000582648 CHMP7Q8WUX9 453 aaPredicted RBP31.14■■■□□ 2.58
ERBB2-211ENST00000582648 ADAMTS12P58397 1594 aa31.11■■■□□ 2.57
ERBB2-211ENST00000582648 RIMBP3CA6NJZ7 1639 aa31.06■■■□□ 2.56
ERBB2-211ENST00000582648 RIMBP3BA6NNM3 1639 aa31.06■■■□□ 2.56
ERBB2-211ENST00000582648 RIMBP3Q9UFD9 1639 aa31.06■■■□□ 2.56
ERBB2-211ENST00000582648 ERICH3Q5RHP9 1530 aa31.05■■■□□ 2.56
ERBB2-211ENST00000582648 ARHGEF11O15085 1522 aa31.02■■■□□ 2.56
ERBB2-211ENST00000582648 CLASP1Q7Z460 1538 aa31.01■■■□□ 2.55
ERBB2-211ENST00000582648 GRIN2AQ12879 1464 aa30.97■■■□□ 2.55
ERBB2-211ENST00000582648 TRIM41Q8WV44 630 aa30.97■■■□□ 2.55
ERBB2-211ENST00000582648 FHAD1B1AJZ9 1412 aa30.96■■■□□ 2.55
ERBB2-211ENST00000582648 KIF27Q86VH2 1401 aa30.92■■■□□ 2.54
ERBB2-211ENST00000582648 CEP170Q5SW79 1584 aa30.88■■■□□ 2.53
ERBB2-211ENST00000582648 NUP160Q12769 1436 aa30.81■■■□□ 2.52
ERBB2-211ENST00000582648 CUL7Q14999 1698 aa30.8■■■□□ 2.52
ERBB2-211ENST00000582648 IGF1RP08069 1367 aa30.77■■■□□ 2.52
ERBB2-211ENST00000582648 ARAP1Q96P48 1450 aa30.76■■■□□ 2.52
ERBB2-211ENST00000582648 CYB5RLQ6IPT4 315 aa30.69■■■□□ 2.5
ERBB2-211ENST00000582648 RUSC2Q8N2Y8 1516 aa30.67■■■□□ 2.5
ERBB2-211ENST00000582648 SHROOM2Q13796 1616 aa30.63■■■□□ 2.49
ERBB2-211ENST00000582648 ERCC6L2Q5T890 1561 aa30.62■■■□□ 2.49
ERBB2-211ENST00000582648 CARMIL1Q5VZK9 1371 aa30.62■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms