RNA–Protein interactions for RNA: ENST00000257181.9

PRPF38A-201, Transcript of pre-mRNA processing factor 38A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRPF38A, Length 5,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-201ENST00000257181 NISCHQ9Y2I1 1504 aa24.59■■□□□ 1.53
PRPF38A-201ENST00000257181 DCAF8L2P0C7V8 631 aa23.98■■□□□ 1.43
PRPF38A-201ENST00000257181 FAM9AQ8IZU1 332 aaPredicted RBP22.42■■□□□ 1.18
PRPF38A-201ENST00000257181 SUPT5HO00267 1087 aaKnown RBP21.84■■□□□ 1.09
PRPF38A-201ENST00000257181 SHROOM4Q9ULL8 1493 aa21.74■■□□□ 1.07
PRPF38A-201ENST00000257181 APLP2Q06481 763 aa21.48■■□□□ 1.03
PRPF38A-201ENST00000257181 ABCC9O60706 1549 aa21.36■■□□□ 1.01
PRPF38A-201ENST00000257181 CCDC180Q9P1Z9 1646 aa21.17■□□□□ 0.98
PRPF38A-201ENST00000257181 TRIM41Q8WV44 630 aa20.82■□□□□ 0.92
PRPF38A-201ENST00000257181 RB1CC1Q8TDY2 1594 aa20.76■□□□□ 0.91
PRPF38A-201ENST00000257181 PABPN1Q86U42 306 aaKnown RBP eCLIP20.65■□□□□ 0.9
PRPF38A-201ENST00000257181 NACADO15069 1562 aa20.55■□□□□ 0.88
PRPF38A-201ENST00000257181 UBTFP17480 764 aaKnown RBP20.53■□□□□ 0.88
PRPF38A-201ENST00000257181 ATP1B4Q9UN42 357 aaPredicted RBP20.5■□□□□ 0.87
PRPF38A-201ENST00000257181 EHMT2Q96KQ7 1210 aa20.37■□□□□ 0.85
PRPF38A-201ENST00000257181 ZCCHC6Q5VYS8 1495 aaKnown RBP20.33■□□□□ 0.84
PRPF38A-201ENST00000257181 MYT1LQ9UL68 1186 aa20.28■□□□□ 0.84
PRPF38A-201ENST00000257181 SCRIBQ14160 1630 aa20.28■□□□□ 0.84
PRPF38A-201ENST00000257181 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.27■□□□□ 0.84
PRPF38A-201ENST00000257181 HNRNPUL2Q1KMD3 747 aaKnown RBP20.27■□□□□ 0.84
PRPF38A-201ENST00000257181 RANGAP1P46060 587 aaPredicted RBP20.16■□□□□ 0.82
PRPF38A-201ENST00000257181 DCAF1Q9Y4B6 1507 aa20.05■□□□□ 0.8
PRPF38A-201ENST00000257181 PELP1Q8IZL8 1130 aaKnown RBP20.03■□□□□ 0.8
PRPF38A-201ENST00000257181 NPM1P06748 294 aaKnown RBP eCLIP19.97■□□□□ 0.79
PRPF38A-201ENST00000257181 ZEB1P37275 1124 aaPredicted RBP19.93■□□□□ 0.78
PRPF38A-201ENST00000257181 FBLN2P98095 1184 aa19.92■□□□□ 0.78
PRPF38A-201ENST00000257181 CDK11AQ9UQ88 783 aaPredicted RBP19.87■□□□□ 0.77
PRPF38A-201ENST00000257181 TTBK1Q5TCY1 1321 aaPredicted RBP19.87■□□□□ 0.77
PRPF38A-201ENST00000257181 MYO15BQ96JP2 1530 aa19.86■□□□□ 0.77
PRPF38A-201ENST00000257181 ERCC6Q03468 1493 aa19.73■□□□□ 0.75
PRPF38A-201ENST00000257181 BAZ1BQ9UIG0 1483 aaKnown RBP19.71■□□□□ 0.75
PRPF38A-201ENST00000257181 ESF1Q9H501 851 aaKnown RBP19.66■□□□□ 0.74
PRPF38A-201ENST00000257181 BAZ1AQ9NRL2 1556 aaPredicted RBP19.62■□□□□ 0.73
PRPF38A-201ENST00000257181 CHMP7Q8WUX9 453 aaPredicted RBP19.56■□□□□ 0.72
PRPF38A-201ENST00000257181 CCER1Q8TC90 406 aaPredicted RBP19.56■□□□□ 0.72
PRPF38A-201ENST00000257181 SMARCA2P51531 1590 aa19.55■□□□□ 0.72
PRPF38A-201ENST00000257181 ACIN1Q9UKV3 1341 aaKnown RBP19.49■□□□□ 0.71
PRPF38A-201ENST00000257181 PDS5BQ9NTI5 1447 aa19.48■□□□□ 0.71
PRPF38A-201ENST00000257181 CHIC1Q5VXU3 224 aa19.44■□□□□ 0.7
PRPF38A-201ENST00000257181 CSRNP3Q8WYN3 585 aa19.43■□□□□ 0.7
PRPF38A-201ENST00000257181 PCGF6Q9BYE7 350 aa19.42■□□□□ 0.7
PRPF38A-201ENST00000257181 EEA1Q15075 1411 aa19.37■□□□□ 0.69
PRPF38A-201ENST00000257181 FAM50AQ14320 339 aaKnown RBP19.3■□□□□ 0.68
PRPF38A-201ENST00000257181 TRIM26Q12899 539 aaPredicted RBP19.27■□□□□ 0.68
PRPF38A-201ENST00000257181 ITGAEP38570 1179 aa19.25■□□□□ 0.67
PRPF38A-201ENST00000257181 TRIM52Q96A61 297 aa19.24■□□□□ 0.67
PRPF38A-201ENST00000257181 CECR2Q9BXF3 1484 aa19.21■□□□□ 0.67
PRPF38A-201ENST00000257181 KIF27Q86VH2 1401 aa19.19■□□□□ 0.66
PRPF38A-201ENST00000257181 BCANQ96GW7 911 aa19.17■□□□□ 0.66
PRPF38A-201ENST00000257181 RSF1Q96T23 1441 aaPredicted RBP19.15■□□□□ 0.66
PRPF38A-201ENST00000257181 ABCC8Q09428 1581 aa19.14■□□□□ 0.66
PRPF38A-201ENST00000257181 WRNQ14191 1432 aaPredicted RBP eCLIP19.14■□□□□ 0.65
PRPF38A-201ENST00000257181 STAG3Q9UJ98 1225 aa19.13■□□□□ 0.65
PRPF38A-201ENST00000257181 CENPBP07199 599 aaPredicted RBP19.09■□□□□ 0.65
PRPF38A-201ENST00000257181 PLEKHD1A6NEE1 506 aa19.07■□□□□ 0.64
PRPF38A-201ENST00000257181 SLC4A1APQ9BWU0 796 aaKnown RBP19.07■□□□□ 0.64
PRPF38A-201ENST00000257181 TSPY4P0CV99 314 aa19.05■□□□□ 0.64
PRPF38A-201ENST00000257181 TSPY10P0CW01 314 aa19.05■□□□□ 0.64
PRPF38A-201ENST00000257181 ZNF777Q9ULD5 760 aaPredicted RBP19.03■□□□□ 0.64
PRPF38A-201ENST00000257181 NEFLP07196 543 aa19.03■□□□□ 0.64
PRPF38A-201ENST00000257181 CARMIL2Q6F5E8 1435 aa19.01■□□□□ 0.63
PRPF38A-201ENST00000257181 CEP164Q9UPV0 1460 aa19■□□□□ 0.63
PRPF38A-201ENST00000257181 NEFMP07197 916 aa18.98■□□□□ 0.63
PRPF38A-201ENST00000257181 P3H3Q8IVL6 736 aa18.98■□□□□ 0.63
PRPF38A-201ENST00000257181 CADPSQ9ULU8 1353 aa18.95■□□□□ 0.62
PRPF38A-201ENST00000257181 MTUS2Q5JR59 1369 aa18.93■□□□□ 0.62
PRPF38A-201ENST00000257181 POLR3GLQ9BT43 218 aa18.92■□□□□ 0.62
PRPF38A-201ENST00000257181 GOLGA3Q08378 1498 aa18.9■□□□□ 0.62
PRPF38A-201ENST00000257181 TOP2AP11388 1531 aaKnown RBP18.88■□□□□ 0.61
PRPF38A-201ENST00000257181 CLIP1P30622 1438 aa18.86■□□□□ 0.61
PRPF38A-201ENST00000257181 TRHP20396 242 aaPredicted RBP18.83■□□□□ 0.6
PRPF38A-201ENST00000257181 HDGFP51858 240 aaKnown RBP18.82■□□□□ 0.6
PRPF38A-201ENST00000257181 ATAD2BQ9ULI0 1458 aa18.82■□□□□ 0.6
PRPF38A-201ENST00000257181 FHAD1B1AJZ9 1412 aa18.8■□□□□ 0.6
PRPF38A-201ENST00000257181 LOC105371045A0A1W2PR82 267 aa18.79■□□□□ 0.6
PRPF38A-201ENST00000257181 ARID4BQ4LE39 1312 aaPredicted RBP18.79■□□□□ 0.6
PRPF38A-201ENST00000257181 ARID3CA6NKF2 412 aa18.79■□□□□ 0.6
PRPF38A-201ENST00000257181 SOGA1O94964 1423 aa18.78■□□□□ 0.6
PRPF38A-201ENST00000257181 SMARCA4P51532 1647 aa18.75■□□□□ 0.59
PRPF38A-201ENST00000257181 PPARGC1BQ86YN6 1023 aaKnown RBP18.75■□□□□ 0.59
PRPF38A-201ENST00000257181 CUX2O14529 1486 aa18.74■□□□□ 0.59
PRPF38A-201ENST00000257181 NCAPD3P42695 1498 aa18.72■□□□□ 0.59
PRPF38A-201ENST00000257181 CARMIL1Q5VZK9 1371 aa18.71■□□□□ 0.59
PRPF38A-201ENST00000257181 CHGAP10645 457 aaKnown RBP18.71■□□□□ 0.59
PRPF38A-201ENST00000257181 OSCARQ8IYS5 282 aa18.69■□□□□ 0.58
PRPF38A-201ENST00000257181 KCNH8Q96L42 1107 aa18.69■□□□□ 0.58
PRPF38A-201ENST00000257181 PPP1R15AO75807 674 aaPredicted RBP18.68■□□□□ 0.58
PRPF38A-201ENST00000257181 KANK1Q14678 1352 aa18.68■□□□□ 0.58
PRPF38A-201ENST00000257181 MROH2BQ7Z745 1585 aa18.64■□□□□ 0.58
PRPF38A-201ENST00000257181 EIF4G1Q04637 1599 aaKnown RBP18.64■□□□□ 0.57
PRPF38A-201ENST00000257181 CCDC88BA6NC98 1476 aa18.63■□□□□ 0.57
PRPF38A-201ENST00000257181 FANCD2Q9BXW9 1451 aa18.63■□□□□ 0.57
PRPF38A-201ENST00000257181 SLC24A1O60721 1099 aa18.62■□□□□ 0.57
PRPF38A-201ENST00000257181 CFDP1Q9UEE9 299 aaPredicted RBP18.62■□□□□ 0.57
PRPF38A-201ENST00000257181 ZNF326Q5BKZ1 582 aaKnown RBP18.61■□□□□ 0.57
PRPF38A-201ENST00000257181 ZBTB47Q9UFB7 747 aaPredicted RBP18.58■□□□□ 0.56
PRPF38A-201ENST00000257181 CCNB3Q8WWL7 1395 aa18.56■□□□□ 0.56
PRPF38A-201ENST00000257181 ERICH6Q7L0X2 663 aa18.55■□□□□ 0.56
PRPF38A-201ENST00000257181 TNIKQ9UKE5 1360 aa18.55■□□□□ 0.56
PRPF38A-201ENST00000257181 NEUROD1Q13562 356 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms