RNA–Protein interactions for RNA: ENST00000584908.5

ERBB2-222, Transcript of erb-b2 receptor tyrosine kinase 2, humanhuman

TSL 1 (best)

Gene ERBB2, Length 1,316 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB2-222ENST00000584908 NISCHQ9Y2I1 1504 aa39.74■■■■□ 3.95
ERBB2-222ENST00000584908 CCDC180Q9P1Z9 1646 aa35.41■■■■□ 3.26
ERBB2-222ENST00000584908 ABCC9O60706 1549 aa34.51■■■■□ 3.12
ERBB2-222ENST00000584908 RB1CC1Q8TDY2 1594 aa33.29■■■□□ 2.92
ERBB2-222ENST00000584908 NACADO15069 1562 aa33.25■■■□□ 2.91
ERBB2-222ENST00000584908 MYO15BQ96JP2 1530 aa33.12■■■□□ 2.89
ERBB2-222ENST00000584908 ZCCHC6Q5VYS8 1495 aaKnown RBP33.11■■■□□ 2.89
ERBB2-222ENST00000584908 DCAF8L2P0C7V8 631 aa33.01■■■□□ 2.87
ERBB2-222ENST00000584908 DCAF1Q9Y4B6 1507 aa32.95■■■□□ 2.87
ERBB2-222ENST00000584908 UNC13AQ9UPW8 1703 aa32.58■■■□□ 2.81
ERBB2-222ENST00000584908 BICRAQ9NZM4 1560 aa32.3■■■□□ 2.76
ERBB2-222ENST00000584908 PABPN1Q86U42 306 aaKnown RBP eCLIP32.2■■■□□ 2.74
ERBB2-222ENST00000584908 SCRIBQ14160 1630 aa32.19■■■□□ 2.74
ERBB2-222ENST00000584908 SHROOM4Q9ULL8 1493 aa32.01■■■□□ 2.71
ERBB2-222ENST00000584908 DNAJC5BQ9UF47 199 aa31.71■■■□□ 2.67
ERBB2-222ENST00000584908 EIF4G1Q04637 1599 aaKnown RBP31.42■■■□□ 2.62
ERBB2-222ENST00000584908 CC2D2AQ9P2K1 1620 aa31.29■■■□□ 2.6
ERBB2-222ENST00000584908 CECR2Q9BXF3 1484 aa31.05■■■□□ 2.56
ERBB2-222ENST00000584908 SMARCA4P51532 1647 aa30.85■■■□□ 2.53
ERBB2-222ENST00000584908 BAZ1AQ9NRL2 1556 aaPredicted RBP30.81■■■□□ 2.52
ERBB2-222ENST00000584908 NCAPD3P42695 1498 aa30.68■■■□□ 2.5
ERBB2-222ENST00000584908 ATAD2BQ9ULI0 1458 aa30.67■■■□□ 2.5
ERBB2-222ENST00000584908 SMARCA2P51531 1590 aa30.64■■■□□ 2.5
ERBB2-222ENST00000584908 PEG3Q9GZU2 1588 aa30.61■■■□□ 2.49
ERBB2-222ENST00000584908 MROH2BQ7Z745 1585 aa30.6■■■□□ 2.49
ERBB2-222ENST00000584908 HMGXB3Q12766 1538 aa30.56■■■□□ 2.48
ERBB2-222ENST00000584908 BAZ1BQ9UIG0 1483 aaKnown RBP30.39■■■□□ 2.45
ERBB2-222ENST00000584908 WIZO95785 1651 aa30.27■■■□□ 2.44
ERBB2-222ENST00000584908 RSF1Q96T23 1441 aaPredicted RBP30.24■■■□□ 2.43
ERBB2-222ENST00000584908 TOP2AP11388 1531 aaKnown RBP29.97■■■□□ 2.39
ERBB2-222ENST00000584908 NESP48681 1621 aa29.88■■■□□ 2.37
ERBB2-222ENST00000584908 LAMC3Q9Y6N6 1575 aa29.88■■■□□ 2.37
ERBB2-222ENST00000584908 CADPSQ9ULU8 1353 aa29.75■■■□□ 2.35
ERBB2-222ENST00000584908 ERCC6Q03468 1493 aa29.74■■■□□ 2.35
ERBB2-222ENST00000584908 PDS5BQ9NTI5 1447 aa29.63■■■□□ 2.33
ERBB2-222ENST00000584908 CFTRP13569 1480 aa29.6■■■□□ 2.33
ERBB2-222ENST00000584908 CCDC88BA6NC98 1476 aa29.59■■■□□ 2.33
ERBB2-222ENST00000584908 KIF21AQ7Z4S6 1674 aa29.58■■■□□ 2.33
ERBB2-222ENST00000584908 CUX2O14529 1486 aa29.53■■■□□ 2.32
ERBB2-222ENST00000584908 THOC2Q8NI27 1593 aaKnown RBP29.52■■■□□ 2.32
ERBB2-222ENST00000584908 PRDM2Q13029 1718 aa29.44■■■□□ 2.3
ERBB2-222ENST00000584908 FANCD2Q9BXW9 1451 aa29.4■■■□□ 2.3
ERBB2-222ENST00000584908 CEP164Q9UPV0 1460 aa29.36■■■□□ 2.29
ERBB2-222ENST00000584908 MRC2Q9UBG0 1479 aa29.34■■■□□ 2.29
ERBB2-222ENST00000584908 SUPT5HO00267 1087 aaKnown RBP29.3■■■□□ 2.28
ERBB2-222ENST00000584908 WDR62O43379 1518 aa29.28■■■□□ 2.28
ERBB2-222ENST00000584908 URB2Q14146 1524 aaKnown RBP29.12■■■□□ 2.25
ERBB2-222ENST00000584908 ABCC8Q09428 1581 aa28.96■■■□□ 2.23
ERBB2-222ENST00000584908 TOPBP1Q92547 1522 aa28.94■■■□□ 2.22
ERBB2-222ENST00000584908 DNMBPQ6XZF7 1577 aa28.92■■■□□ 2.22
ERBB2-222ENST00000584908 IFT140Q96RY7 1462 aa28.76■■■□□ 2.2
ERBB2-222ENST00000584908 CUX1P39880 1505 aa28.71■■■□□ 2.19
ERBB2-222ENST00000584908 POLA1P09884 1462 aaPredicted RBP28.69■■■□□ 2.18
ERBB2-222ENST00000584908 TARBP1Q13395 1621 aaKnown RBP28.67■■■□□ 2.18
ERBB2-222ENST00000584908 ZNF608Q9ULD9 1512 aaPredicted RBP28.61■■■□□ 2.17
ERBB2-222ENST00000584908 DNAJC5Q9H3Z4 198 aa28.61■■■□□ 2.17
ERBB2-222ENST00000584908 FGD5Q6ZNL6 1462 aa28.6■■■□□ 2.17
ERBB2-222ENST00000584908 SOGA1O94964 1423 aa28.54■■■□□ 2.16
ERBB2-222ENST00000584908 EIF4G3O43432 1585 aaKnown RBP28.53■■■□□ 2.16
ERBB2-222ENST00000584908 RAD54L2Q9Y4B4 1467 aa28.52■■■□□ 2.16
ERBB2-222ENST00000584908 BIVM-ERCC5R4GMW8 1640 aa28.51■■■□□ 2.15
ERBB2-222ENST00000584908 WRNQ14191 1432 aaPredicted RBP eCLIP28.5■■■□□ 2.15
ERBB2-222ENST00000584908 TOP2BQ02880 1626 aa28.49■■■□□ 2.15
ERBB2-222ENST00000584908 WDR97A6NE52 1622 aa28.48■■■□□ 2.15
ERBB2-222ENST00000584908 SYNJ1O43426 1573 aa28.45■■■□□ 2.14
ERBB2-222ENST00000584908 AQRO60306 1485 aaKnown RBP eCLIP28.43■■■□□ 2.141e-6■■■■□ 19.5
ERBB2-222ENST00000584908 ABCA10Q8WWZ4 1543 aa28.37■■■□□ 2.13
ERBB2-222ENST00000584908 TDRD9Q8NDG6 1382 aaKnown RBP28.36■■■□□ 2.13
ERBB2-222ENST00000584908 ABCA5Q8WWZ7 1642 aa28.27■■■□□ 2.12
ERBB2-222ENST00000584908 GRIN2BQ13224 1484 aa28.24■■■□□ 2.11
ERBB2-222ENST00000584908 OSCARQ8IYS5 282 aa28.23■■■□□ 2.11
ERBB2-222ENST00000584908 GAPVD1Q14C86 1478 aa28.23■■■□□ 2.11
ERBB2-222ENST00000584908 PBRM1Q86U86 1689 aa28.21■■■□□ 2.11
ERBB2-222ENST00000584908 MAGI1Q96QZ7 1491 aaPredicted RBP28.19■■■□□ 2.1
ERBB2-222ENST00000584908 CHD1O14646 1710 aa28.19■■■□□ 2.1
ERBB2-222ENST00000584908 SNAPC4Q5SXM2 1469 aa28.17■■■□□ 2.1
ERBB2-222ENST00000584908 SYNJ2O15056 1496 aa28.06■■■□□ 2.08
ERBB2-222ENST00000584908 ERICH3Q5RHP9 1530 aa28.04■■■□□ 2.08
ERBB2-222ENST00000584908 FBLN2P98095 1184 aa27.99■■■□□ 2.07
ERBB2-222ENST00000584908 ADAMTS12P58397 1594 aa27.98■■■□□ 2.07
ERBB2-222ENST00000584908 CHMP7Q8WUX9 453 aaPredicted RBP27.97■■■□□ 2.07
ERBB2-222ENST00000584908 FHAD1B1AJZ9 1412 aa27.91■■■□□ 2.06
ERBB2-222ENST00000584908 CLASP1Q7Z460 1538 aa27.9■■■□□ 2.06
ERBB2-222ENST00000584908 KIF27Q86VH2 1401 aa27.9■■■□□ 2.06
ERBB2-222ENST00000584908 GRIN2AQ12879 1464 aa27.88■■■□□ 2.05
ERBB2-222ENST00000584908 RIMBP3CA6NJZ7 1639 aa27.83■■■□□ 2.05
ERBB2-222ENST00000584908 RIMBP3BA6NNM3 1639 aa27.83■■■□□ 2.05
ERBB2-222ENST00000584908 RIMBP3Q9UFD9 1639 aa27.83■■■□□ 2.05
ERBB2-222ENST00000584908 ARHGEF11O15085 1522 aa27.82■■■□□ 2.04
ERBB2-222ENST00000584908 IGF1RP08069 1367 aa27.8■■■□□ 2.04
ERBB2-222ENST00000584908 NUP160Q12769 1436 aa27.78■■■□□ 2.04
ERBB2-222ENST00000584908 CUL7Q14999 1698 aa27.78■■■□□ 2.04
ERBB2-222ENST00000584908 CEP170Q5SW79 1584 aa27.75■■■□□ 2.03
ERBB2-222ENST00000584908 TRIM41Q8WV44 630 aa27.72■■■□□ 2.03
ERBB2-222ENST00000584908 RUSC2Q8N2Y8 1516 aa27.62■■■□□ 2.01
ERBB2-222ENST00000584908 CARMIL1Q5VZK9 1371 aa27.62■■■□□ 2.01
ERBB2-222ENST00000584908 SHROOM2Q13796 1616 aa27.61■■■□□ 2.01
ERBB2-222ENST00000584908 ARAP1Q96P48 1450 aa27.59■■■□□ 2.01
ERBB2-222ENST00000584908 KIAA0586Q9BVV6 1533 aa27.5■■□□□ 1.99
ERBB2-222ENST00000584908 RAPGEF2Q9Y4G8 1499 aa27.47■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms