RNA–Protein interactions for RNA: ENST00000560549.5

TMOD3-207, Transcript of tropomodulin 3, humanhuman

TSL 1 (best)

Gene TMOD3, Length 1,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMOD3-207ENST00000560549 AEBP2Q6ZN18 517 aaPredicted RBP22.79■■□□□ 1.24
TMOD3-207ENST00000560549 CHIC1Q5VXU3 224 aa21.91■■□□□ 1.1
TMOD3-207ENST00000560549 SENP3Q9H4L4 574 aaPredicted RBP19.37■□□□□ 0.69
TMOD3-207ENST00000560549 PHF23Q9BUL5 403 aaPredicted RBP19.24■□□□□ 0.67
TMOD3-207ENST00000560549 FOXD1Q16676 465 aa18.02■□□□□ 0.48
TMOD3-207ENST00000560549 PLPPR3Q6T4P5 718 aa17.6■□□□□ 0.41
TMOD3-207ENST00000560549 PPP6R1Q9UPN7 881 aa17.07■□□□□ 0.32
TMOD3-207ENST00000560549 ADRA2BP18089 450 aa16.99■□□□□ 0.31
TMOD3-207ENST00000560549 PIAS4Q8N2W9 510 aaPredicted RBP16.86■□□□□ 0.29
TMOD3-207ENST00000560549 MSH5O43196 834 aa16.75■□□□□ 0.27
TMOD3-207ENST00000560549 POTEDQ86YR6 584 aa15.89■□□□□ 0.13
TMOD3-207ENST00000560549 SCAF1Q9H7N4 1312 aaKnown RBP15.53■□□□□ 0.08
TMOD3-207ENST00000560549 MAPK8IP2Q13387 824 aaPredicted RBP15.52■□□□□ 0.08
TMOD3-207ENST00000560549 PPP4R3CPQ6ZMV5 832 aa15.46■□□□□ 0.06
TMOD3-207ENST00000560549 DMRT2Q9Y5R5 561 aa15.43■□□□□ 0.06
TMOD3-207ENST00000560549 CNKSR2Q8WXI2 1034 aa15.12■□□□□ 0.01
TMOD3-207ENST00000560549 HOXD11P31277 338 aaPredicted RBP15.01□□□□□ -0.01
TMOD3-207ENST00000560549 RNF216Q9NWF9 866 aaPredicted RBP14.93□□□□□ -0.02
TMOD3-207ENST00000560549 NCBP3Q53F19 620 aaKnown RBP14.91□□□□□ -0.02
TMOD3-207ENST00000560549 NPM3O75607 178 aaKnown RBP14.74□□□□□ -0.05
TMOD3-207ENST00000560549 KCNA4P22459 653 aa14.69□□□□□ -0.06
TMOD3-207ENST00000560549 DCAF8L1A6NGE4 600 aa14.61□□□□□ -0.07
TMOD3-207ENST00000560549 DNAJC5BQ9UF47 199 aa14.52□□□□□ -0.08
TMOD3-207ENST00000560549 RNF39Q9H2S5 420 aa14.35□□□□□ -0.11
TMOD3-207ENST00000560549 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.16□□□□□ -0.14
TMOD3-207ENST00000560549 CACNB1Q02641 598 aaPredicted RBP14.14□□□□□ -0.15
TMOD3-207ENST00000560549 C1QBPQ07021 282 aaKnown RBP14.14□□□□□ -0.15
TMOD3-207ENST00000560549 SLC4A2P04920 1241 aa14.04□□□□□ -0.16
TMOD3-207ENST00000560549 U3KPZ7 1027 aaPredicted RBP13.99□□□□□ -0.17
TMOD3-207ENST00000560549 SLC4A1APQ9BWU0 796 aaKnown RBP13.89□□□□□ -0.19
TMOD3-207ENST00000560549 SPINK5Q9NQ38 1064 aaPredicted RBP13.66□□□□□ -0.22
TMOD3-207ENST00000560549 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.64□□□□□ -0.23
TMOD3-207ENST00000560549 HNRNPUL2Q1KMD3 747 aaKnown RBP13.64□□□□□ -0.23
TMOD3-207ENST00000560549 FOXD4L1Q9NU39 408 aa13.63□□□□□ -0.23
TMOD3-207ENST00000560549 MYCNP04198 464 aaPredicted RBP13.61□□□□□ -0.23
TMOD3-207ENST00000560549 SAMD1Q6SPF0 538 aaPredicted RBP13.59□□□□□ -0.23
TMOD3-207ENST00000560549 ZBTB22O15209 634 aa13.57□□□□□ -0.24
TMOD3-207ENST00000560549 APLP2Q06481 763 aa13.57□□□□□ -0.24
TMOD3-207ENST00000560549 CAPN15O75808 1086 aa13.55□□□□□ -0.24
TMOD3-207ENST00000560549 DSG3P32926 999 aa13.51□□□□□ -0.25
TMOD3-207ENST00000560549 ZNF219Q9P2Y4 722 aaPredicted RBP13.46□□□□□ -0.25
TMOD3-207ENST00000560549 TRHP20396 242 aaPredicted RBP13.4□□□□□ -0.26
TMOD3-207ENST00000560549 EHMT2Q96KQ7 1210 aa13.29□□□□□ -0.28
TMOD3-207ENST00000560549 ATF5Q9Y2D1 282 aaPredicted RBP13.29□□□□□ -0.28
TMOD3-207ENST00000560549 ABCB7O75027 752 aa13.28□□□□□ -0.28
TMOD3-207ENST00000560549 CSRNP3Q8WYN3 585 aa13.27□□□□□ -0.29
TMOD3-207ENST00000560549 ATXN8OSP0DMR3 200 aa13.23□□□□□ -0.29
TMOD3-207ENST00000560549 POLA2Q14181 598 aa13.16□□□□□ -0.3
TMOD3-207ENST00000560549 ZBTB12Q9Y330 459 aaPredicted RBP12.93□□□□□ -0.34
TMOD3-207ENST00000560549 RBM42Q9BTD8 480 aaKnown RBP12.85□□□□□ -0.35
TMOD3-207ENST00000560549 OSCARQ8IYS5 282 aa12.72□□□□□ -0.37
TMOD3-207ENST00000560549 MKRN4PQ13434 485 aaPredicted RBP12.72□□□□□ -0.37
TMOD3-207ENST00000560549 FBLN2P98095 1184 aa12.69□□□□□ -0.38
TMOD3-207ENST00000560549 AKT1S1Q96B36 256 aa12.65□□□□□ -0.38
TMOD3-207ENST00000560549 SPDYE2BA6NHP3 402 aa12.58□□□□□ -0.4
TMOD3-207ENST00000560549 SPDYE6P0CI01 402 aa12.58□□□□□ -0.4
TMOD3-207ENST00000560549 SPDYE2Q495Y8 402 aa12.58□□□□□ -0.4
TMOD3-207ENST00000560549 REM2Q8IYK8 340 aaPredicted RBP12.51□□□□□ -0.41
TMOD3-207ENST00000560549 POTEHQ6S545 545 aa12.48□□□□□ -0.41
TMOD3-207ENST00000560549 SSUH2Q9Y2M2 353 aa12.48□□□□□ -0.41
TMOD3-207ENST00000560549 CHRDL2Q6WN34 429 aa12.46□□□□□ -0.41
TMOD3-207ENST00000560549 ZNF692Q9BU19 519 aaPredicted RBP12.4□□□□□ -0.42
TMOD3-207ENST00000560549 PITPNM1O00562 1244 aa12.37□□□□□ -0.43
TMOD3-207ENST00000560549 FXR2P51116 673 aaKnown RBP eCLIP12.26□□□□□ -0.45
TMOD3-207ENST00000560549 SPDYE1Q8NFV5 336 aaPredicted RBP12.26□□□□□ -0.45
TMOD3-207ENST00000560549 PABPN1Q86U42 306 aaKnown RBP eCLIP12.24□□□□□ -0.45
TMOD3-207ENST00000560549 PIP4P2Q8N4L2 257 aa12.24□□□□□ -0.45
TMOD3-207ENST00000560549 SPDYE4A6NLX3 237 aa12.2□□□□□ -0.46
TMOD3-207ENST00000560549 CLEC11AQ9Y240 323 aa12.14□□□□□ -0.47
TMOD3-207ENST00000560549 PROM2Q8N271 834 aa12.08□□□□□ -0.48
TMOD3-207ENST00000560549 PRR29P0C7W0 189 aa12.02□□□□□ -0.48
TMOD3-207ENST00000560549 PRKAR2AP13861 404 aaKnown RBP12.02□□□□□ -0.49
TMOD3-207ENST00000560549 STAG3Q9UJ98 1225 aa11.99□□□□□ -0.49
TMOD3-207ENST00000560549 FKBP8Q14318 412 aa11.95□□□□□ -0.5
TMOD3-207ENST00000560549 CHADLQ6NUI6 762 aa11.93□□□□□ -0.5
TMOD3-207ENST00000560549 HAX1O00165 279 aa11.87□□□□□ -0.51
TMOD3-207ENST00000560549 CREBZFQ9NS37 354 aa11.86□□□□□ -0.51
TMOD3-207ENST00000560549 C19orf67A6NJJ6 358 aa11.84□□□□□ -0.51
TMOD3-207ENST00000560549 SP7Q8TDD2 431 aaPredicted RBP11.84□□□□□ -0.51
TMOD3-207ENST00000560549 EVX2Q03828 476 aa11.83□□□□□ -0.52
TMOD3-207ENST00000560549 FARP1Q9Y4F1 1045 aaPredicted RBP11.83□□□□□ -0.52
TMOD3-207ENST00000560549 MNX1P50219 401 aaPredicted RBP11.74□□□□□ -0.53
TMOD3-207ENST00000560549 CD44P16070 742 aaKnown RBP11.65□□□□□ -0.54
TMOD3-207ENST00000560549 NPM1P06748 294 aaKnown RBP eCLIP11.59□□□□□ -0.55
TMOD3-207ENST00000560549 GABBR2O75899 941 aa11.56□□□□□ -0.56
TMOD3-207ENST00000560549 ZNF579Q8NAF0 562 aaKnown RBP11.56□□□□□ -0.56
TMOD3-207ENST00000560549 MIER1Q8N108 512 aa11.55□□□□□ -0.56
TMOD3-207ENST00000560549 FBXO3Q9UK99 471 aa11.53□□□□□ -0.56
TMOD3-207ENST00000560549 CLCN6P51797 869 aa11.51□□□□□ -0.57
TMOD3-207ENST00000560549 ZRANB1Q9UGI0 708 aa11.51□□□□□ -0.57
TMOD3-207ENST00000560549 PLEKHG5O94827 1062 aa11.5□□□□□ -0.57
TMOD3-207ENST00000560549 PLCD3Q8N3E9 789 aa11.49□□□□□ -0.57
TMOD3-207ENST00000560549 PAK3O75914 559 aaPredicted RBP11.45□□□□□ -0.58
TMOD3-207ENST00000560549 ZBTB47Q9UFB7 747 aaPredicted RBP11.43□□□□□ -0.58
TMOD3-207ENST00000560549 VASPP50552 380 aaPredicted RBP11.41□□□□□ -0.58
TMOD3-207ENST00000560549 NUBP1P53384 320 aa11.4□□□□□ -0.58
TMOD3-207ENST00000560549 RASEFQ8IZ41 740 aa11.4□□□□□ -0.58
TMOD3-207ENST00000560549 PHF12Q96QT6 1004 aa11.4□□□□□ -0.58
TMOD3-207ENST00000560549 CCDC61Q9Y6R9 512 aa11.39□□□□□ -0.59
TMOD3-207ENST00000560549 POTEIP0CG38 1075 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms