RNA–Protein interactions for RNA: ENST00000578199.5

ERBB2-205, Transcript of erb-b2 receptor tyrosine kinase 2, humanhuman

TSL 1 (best) BASIC

Gene ERBB2, Length 2,526 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB2-205ENST00000578199 NISCHQ9Y2I1 1504 aa37.18■■■■□ 3.54
ERBB2-205ENST00000578199 CCDC180Q9P1Z9 1646 aa31.67■■■□□ 2.66
ERBB2-205ENST00000578199 SHROOM4Q9ULL8 1493 aa31.63■■■□□ 2.65
ERBB2-205ENST00000578199 ZCCHC6Q5VYS8 1495 aaKnown RBP31.37■■■□□ 2.61
ERBB2-205ENST00000578199 DCAF8L2P0C7V8 631 aa31.08■■■□□ 2.57
ERBB2-205ENST00000578199 SUPT5HO00267 1087 aaKnown RBP30.88■■■□□ 2.53
ERBB2-205ENST00000578199 DCAF1Q9Y4B6 1507 aa30.43■■■□□ 2.46
ERBB2-205ENST00000578199 CHIC1Q5VXU3 224 aa29.83■■■□□ 2.37
ERBB2-205ENST00000578199 SCRIBQ14160 1630 aa29.75■■■□□ 2.35
ERBB2-205ENST00000578199 ABCC9O60706 1549 aa29.72■■■□□ 2.35
ERBB2-205ENST00000578199 MYO15BQ96JP2 1530 aa29.66■■■□□ 2.34
ERBB2-205ENST00000578199 NACADO15069 1562 aa29.37■■■□□ 2.29
ERBB2-205ENST00000578199 RSF1Q96T23 1441 aaPredicted RBP29.34■■■□□ 2.29
ERBB2-205ENST00000578199 CECR2Q9BXF3 1484 aa29.09■■■□□ 2.25
ERBB2-205ENST00000578199 LOC105371045A0A1W2PR82 267 aa29.02■■■□□ 2.24
ERBB2-205ENST00000578199 RB1CC1Q8TDY2 1594 aa29■■■□□ 2.23
ERBB2-205ENST00000578199 MROH2BQ7Z745 1585 aa28.93■■■□□ 2.22
ERBB2-205ENST00000578199 WIZO95785 1651 aa28.78■■■□□ 2.2
ERBB2-205ENST00000578199 TRIM41Q8WV44 630 aa28.74■■■□□ 2.19
ERBB2-205ENST00000578199 PCGF6Q9BYE7 350 aa28.66■■■□□ 2.18
ERBB2-205ENST00000578199 UNC13AQ9UPW8 1703 aa28.6■■■□□ 2.17
ERBB2-205ENST00000578199 FAM9AQ8IZU1 332 aaPredicted RBP28.58■■■□□ 2.16
ERBB2-205ENST00000578199 BAZ1AQ9NRL2 1556 aaPredicted RBP28.55■■■□□ 2.16
ERBB2-205ENST00000578199 PABPN1Q86U42 306 aaKnown RBP eCLIP28.43■■■□□ 2.14
ERBB2-205ENST00000578199 EHMT2Q96KQ7 1210 aa28.4■■■□□ 2.14
ERBB2-205ENST00000578199 HRCP23327 699 aa28.38■■■□□ 2.13
ERBB2-205ENST00000578199 SMARCA4P51532 1647 aa28.37■■■□□ 2.13
ERBB2-205ENST00000578199 TOP2AP11388 1531 aaKnown RBP28.24■■■□□ 2.11
ERBB2-205ENST00000578199 BICRAQ9NZM4 1560 aa28.24■■■□□ 2.11
ERBB2-205ENST00000578199 EIF4G1Q04637 1599 aaKnown RBP28.18■■■□□ 2.1
ERBB2-205ENST00000578199 CCDC88BA6NC98 1476 aa28.18■■■□□ 2.1
ERBB2-205ENST00000578199 SMARCA2P51531 1590 aa28.12■■■□□ 2.09
ERBB2-205ENST00000578199 TRIM26Q12899 539 aaPredicted RBP28.11■■■□□ 2.09
ERBB2-205ENST00000578199 ABCC8Q09428 1581 aa28.05■■■□□ 2.08
ERBB2-205ENST00000578199 PPARGC1BQ86YN6 1023 aaKnown RBP27.97■■■□□ 2.07
ERBB2-205ENST00000578199 PEG3Q9GZU2 1588 aa27.79■■■□□ 2.04
ERBB2-205ENST00000578199 SOGA1O94964 1423 aa27.73■■■□□ 2.03
ERBB2-205ENST00000578199 ATAD2BQ9ULI0 1458 aa27.73■■■□□ 2.03
ERBB2-205ENST00000578199 RUSC2Q8N2Y8 1516 aa27.64■■■□□ 2.02
ERBB2-205ENST00000578199 BAZ1BQ9UIG0 1483 aaKnown RBP27.63■■■□□ 2.01
ERBB2-205ENST00000578199 WRNQ14191 1432 aaPredicted RBP eCLIP27.56■■■□□ 2
ERBB2-205ENST00000578199 CSRNP3Q8WYN3 585 aa27.52■■■□□ 2
ERBB2-205ENST00000578199 SYNJ1O43426 1573 aa27.45■■□□□ 1.99
ERBB2-205ENST00000578199 UBTFP17480 764 aaKnown RBP27.43■■□□□ 1.98
ERBB2-205ENST00000578199 CEP162Q5TB80 1403 aa27.42■■□□□ 1.98
ERBB2-205ENST00000578199 EEA1Q15075 1411 aa27.4■■□□□ 1.98
ERBB2-205ENST00000578199 TTBK1Q5TCY1 1321 aaPredicted RBP27.38■■□□□ 1.97
ERBB2-205ENST00000578199 TNIKQ9UKE5 1360 aa27.37■■□□□ 1.97
ERBB2-205ENST00000578199 ZEB1P37275 1124 aaPredicted RBP27.28■■□□□ 1.96
ERBB2-205ENST00000578199 GOLGA3Q08378 1498 aa27.26■■□□□ 1.95
ERBB2-205ENST00000578199 NCAPD3P42695 1498 aa27.21■■□□□ 1.95
ERBB2-205ENST00000578199 HMGXB3Q12766 1538 aa27.14■■□□□ 1.94
ERBB2-205ENST00000578199 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.14■■□□□ 1.94
ERBB2-205ENST00000578199 CEP164Q9UPV0 1460 aa27.13■■□□□ 1.93
ERBB2-205ENST00000578199 TOP2BQ02880 1626 aa27.1■■□□□ 1.93
ERBB2-205ENST00000578199 KIF21BO75037 1637 aa27.08■■□□□ 1.92
ERBB2-205ENST00000578199 RANGAP1P46060 587 aaPredicted RBP27.06■■□□□ 1.92
ERBB2-205ENST00000578199 RAPGEF2Q9Y4G8 1499 aa27.04■■□□□ 1.92
ERBB2-205ENST00000578199 CCER1Q8TC90 406 aaPredicted RBP26.99■■□□□ 1.91
ERBB2-205ENST00000578199 BIVM-ERCC5R4GMW8 1640 aa26.99■■□□□ 1.91
ERBB2-205ENST00000578199 CLIP1P30622 1438 aa26.97■■□□□ 1.91
ERBB2-205ENST00000578199 CUX1P39880 1505 aa26.94■■□□□ 1.9
ERBB2-205ENST00000578199 CFTRP13569 1480 aa26.92■■□□□ 1.9
ERBB2-205ENST00000578199 VPS8Q8N3P4 1428 aa26.79■■□□□ 1.88
ERBB2-205ENST00000578199 PRXQ9BXM0 1461 aa26.76■■□□□ 1.87
ERBB2-205ENST00000578199 CC2D2AQ9P2K1 1620 aa26.73■■□□□ 1.87
ERBB2-205ENST00000578199 KIF27Q86VH2 1401 aa26.71■■□□□ 1.87
ERBB2-205ENST00000578199 APLP2Q06481 763 aa26.7■■□□□ 1.87
ERBB2-205ENST00000578199 CADPSQ9ULU8 1353 aa26.7■■□□□ 1.86
ERBB2-205ENST00000578199 ERICH3Q5RHP9 1530 aa26.68■■□□□ 1.86
ERBB2-205ENST00000578199 HNRNPUL2Q1KMD3 747 aaKnown RBP26.68■■□□□ 1.86
ERBB2-205ENST00000578199 PRDM2Q13029 1718 aa26.64■■□□□ 1.86
ERBB2-205ENST00000578199 ARAP1Q96P48 1450 aa26.57■■□□□ 1.84
ERBB2-205ENST00000578199 CUX2O14529 1486 aa26.56■■□□□ 1.84
ERBB2-205ENST00000578199 FGD5Q6ZNL6 1462 aa26.5■■□□□ 1.83
ERBB2-205ENST00000578199 IGF1RP08069 1367 aa26.5■■□□□ 1.83
ERBB2-205ENST00000578199 KANK4Q5T7N3 995 aaPredicted RBP26.47■■□□□ 1.83
ERBB2-205ENST00000578199 FANCD2Q9BXW9 1451 aa26.45■■□□□ 1.82
ERBB2-205ENST00000578199 NESP48681 1621 aa26.42■■□□□ 1.82
ERBB2-205ENST00000578199 ARHGAP35Q9NRY4 1499 aa26.4■■□□□ 1.82
ERBB2-205ENST00000578199 CARMIL1Q5VZK9 1371 aa26.37■■□□□ 1.81
ERBB2-205ENST00000578199 RAD54L2Q9Y4B4 1467 aa26.32■■□□□ 1.8
ERBB2-205ENST00000578199 DIEXFQ68CQ4 756 aaKnown RBP26.28■■□□□ 1.8
ERBB2-205ENST00000578199 DNAJC5BQ9UF47 199 aa26.28■■□□□ 1.8
ERBB2-205ENST00000578199 TOPBP1Q92547 1522 aa26.24■■□□□ 1.79
ERBB2-205ENST00000578199 DNMBPQ6XZF7 1577 aa26.23■■□□□ 1.79
ERBB2-205ENST00000578199 POLA1P09884 1462 aaPredicted RBP26.22■■□□□ 1.79
ERBB2-205ENST00000578199 P3H3Q8IVL6 736 aa26.21■■□□□ 1.79
ERBB2-205ENST00000578199 ZNF316A6NFI3 1004 aaPredicted RBP26.15■■□□□ 1.78
ERBB2-205ENST00000578199 ABCA10Q8WWZ4 1543 aa26.14■■□□□ 1.78
ERBB2-205ENST00000578199 ITGAEP38570 1179 aa26.12■■□□□ 1.77
ERBB2-205ENST00000578199 RRBP1Q9P2E9 1410 aaKnown RBP26.11■■□□□ 1.77
ERBB2-205ENST00000578199 URB2Q14146 1524 aaKnown RBP26.09■■□□□ 1.77
ERBB2-205ENST00000578199 ATP1B4Q9UN42 357 aaPredicted RBP26.08■■□□□ 1.76
ERBB2-205ENST00000578199 LAMC3Q9Y6N6 1575 aa26.07■■□□□ 1.76
ERBB2-205ENST00000578199 CCNB3Q8WWL7 1395 aa26.06■■□□□ 1.76
ERBB2-205ENST00000578199 DHX57Q6P158 1386 aaKnown RBP26.04■■□□□ 1.76
ERBB2-205ENST00000578199 TIAM1Q13009 1591 aa26.03■■□□□ 1.76
ERBB2-205ENST00000578199 TDRD9Q8NDG6 1382 aaKnown RBP26.02■■□□□ 1.76
ERBB2-205ENST00000578199 SCAF1Q9H7N4 1312 aaKnown RBP26■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms