RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 NISCHQ9Y2I1 1504 aa32.77■■■□□ 2.84
GPC3-202ENST00000394299 CCDC180Q9P1Z9 1646 aa28.05■■■□□ 2.08
GPC3-202ENST00000394299 SHROOM4Q9ULL8 1493 aa27.58■■■□□ 2.01
GPC3-202ENST00000394299 ZCCHC6Q5VYS8 1495 aaKnown RBP27.58■■■□□ 2.01
GPC3-202ENST00000394299 DCAF8L2P0C7V8 631 aa27.45■■□□□ 1.98
GPC3-202ENST00000394299 DCAF1Q9Y4B6 1507 aa26.84■■□□□ 1.89
GPC3-202ENST00000394299 SUPT5HO00267 1087 aaKnown RBP26.78■■□□□ 1.88
GPC3-202ENST00000394299 ABCC9O60706 1549 aa26.61■■□□□ 1.85
GPC3-202ENST00000394299 MYO15BQ96JP2 1530 aa26.28■■□□□ 1.8
GPC3-202ENST00000394299 SCRIBQ14160 1630 aa26.26■■□□□ 1.79
GPC3-202ENST00000394299 NACADO15069 1562 aa26.11■■□□□ 1.77
GPC3-202ENST00000394299 RB1CC1Q8TDY2 1594 aa25.81■■□□□ 1.72
GPC3-202ENST00000394299 CHIC1Q5VXU3 224 aa25.74■■□□□ 1.71
GPC3-202ENST00000394299 RSF1Q96T23 1441 aaPredicted RBP25.73■■□□□ 1.71
GPC3-202ENST00000394299 CECR2Q9BXF3 1484 aa25.65■■□□□ 1.7
GPC3-202ENST00000394299 MROH2BQ7Z745 1585 aa25.47■■□□□ 1.67
GPC3-202ENST00000394299 UNC13AQ9UPW8 1703 aa25.4■■□□□ 1.66
GPC3-202ENST00000394299 PABPN1Q86U42 306 aaKnown RBP eCLIP25.39■■□□□ 1.652e-6■■□□□ 12
GPC3-202ENST00000394299 WIZO95785 1651 aa25.28■■□□□ 1.64
GPC3-202ENST00000394299 BAZ1AQ9NRL2 1556 aaPredicted RBP25.18■■□□□ 1.62
GPC3-202ENST00000394299 BICRAQ9NZM4 1560 aa25.17■■□□□ 1.62
GPC3-202ENST00000394299 SMARCA4P51532 1647 aa25.05■■□□□ 1.6
GPC3-202ENST00000394299 LOC105371045A0A1W2PR82 267 aa25■■□□□ 1.59
GPC3-202ENST00000394299 TRIM41Q8WV44 630 aa24.96■■□□□ 1.59
GPC3-202ENST00000394299 TOP2AP11388 1531 aaKnown RBP24.84■■□□□ 1.57
GPC3-202ENST00000394299 CCDC88BA6NC98 1476 aa24.79■■□□□ 1.56
GPC3-202ENST00000394299 FAM9AQ8IZU1 332 aaPredicted RBP24.78■■□□□ 1.56
GPC3-202ENST00000394299 SMARCA2P51531 1590 aa24.71■■□□□ 1.55
GPC3-202ENST00000394299 EIF4G1Q04637 1599 aaKnown RBP24.63■■□□□ 1.53
GPC3-202ENST00000394299 EHMT2Q96KQ7 1210 aa24.61■■□□□ 1.53
GPC3-202ENST00000394299 ATAD2BQ9ULI0 1458 aa24.59■■□□□ 1.53
GPC3-202ENST00000394299 PEG3Q9GZU2 1588 aa24.58■■□□□ 1.53
GPC3-202ENST00000394299 ABCC8Q09428 1581 aa24.52■■□□□ 1.52
GPC3-202ENST00000394299 BAZ1BQ9UIG0 1483 aaKnown RBP24.47■■□□□ 1.51
GPC3-202ENST00000394299 PCGF6Q9BYE7 350 aa24.33■■□□□ 1.49
GPC3-202ENST00000394299 NCAPD3P42695 1498 aa24.21■■□□□ 1.47
GPC3-202ENST00000394299 SOGA1O94964 1423 aa24.2■■□□□ 1.47
GPC3-202ENST00000394299 WRNQ14191 1432 aaPredicted RBP eCLIP24.17■■□□□ 1.46
GPC3-202ENST00000394299 RUSC2Q8N2Y8 1516 aa24.14■■□□□ 1.45
GPC3-202ENST00000394299 HMGXB3Q12766 1538 aa24.1■■□□□ 1.45
GPC3-202ENST00000394299 SYNJ1O43426 1573 aa24.06■■□□□ 1.44
GPC3-202ENST00000394299 CSRNP3Q8WYN3 585 aa24.02■■□□□ 1.44
GPC3-202ENST00000394299 TRIM26Q12899 539 aaPredicted RBP23.96■■□□□ 1.43
GPC3-202ENST00000394299 PPARGC1BQ86YN6 1023 aaKnown RBP23.93■■□□□ 1.42
GPC3-202ENST00000394299 CC2D2AQ9P2K1 1620 aa23.92■■□□□ 1.42
GPC3-202ENST00000394299 EEA1Q15075 1411 aa23.88■■□□□ 1.41
GPC3-202ENST00000394299 UBTFP17480 764 aaKnown RBP23.87■■□□□ 1.41
GPC3-202ENST00000394299 HRCP23327 699 aa23.86■■□□□ 1.41
GPC3-202ENST00000394299 CFTRP13569 1480 aa23.85■■□□□ 1.41
GPC3-202ENST00000394299 TOP2BQ02880 1626 aa23.79■■□□□ 1.4
GPC3-202ENST00000394299 TNIKQ9UKE5 1360 aa23.77■■□□□ 1.4
GPC3-202ENST00000394299 CEP162Q5TB80 1403 aa23.76■■□□□ 1.39
GPC3-202ENST00000394299 CUX1P39880 1505 aa23.74■■□□□ 1.39
GPC3-202ENST00000394299 CADPSQ9ULU8 1353 aa23.73■■□□□ 1.39
GPC3-202ENST00000394299 GOLGA3Q08378 1498 aa23.71■■□□□ 1.39
GPC3-202ENST00000394299 BIVM-ERCC5R4GMW8 1640 aa23.69■■□□□ 1.38
GPC3-202ENST00000394299 DNAJC5BQ9UF47 199 aa23.65■■□□□ 1.38
GPC3-202ENST00000394299 CEP164Q9UPV0 1460 aa23.64■■□□□ 1.37
GPC3-202ENST00000394299 TTBK1Q5TCY1 1321 aaPredicted RBP23.63■■□□□ 1.37
GPC3-202ENST00000394299 RAPGEF2Q9Y4G8 1499 aa23.62■■□□□ 1.37
GPC3-202ENST00000394299 RANGAP1P46060 587 aaPredicted RBP23.61■■□□□ 1.37
GPC3-202ENST00000394299 KIF21BO75037 1637 aa23.58■■□□□ 1.36
GPC3-202ENST00000394299 NESP48681 1621 aa23.54■■□□□ 1.36
GPC3-202ENST00000394299 PRDM2Q13029 1718 aa23.5■■□□□ 1.35
GPC3-202ENST00000394299 FANCD2Q9BXW9 1451 aa23.48■■□□□ 1.35
GPC3-202ENST00000394299 KIF27Q86VH2 1401 aa23.46■■□□□ 1.35
GPC3-202ENST00000394299 CLIP1P30622 1438 aa23.45■■□□□ 1.34
GPC3-202ENST00000394299 PRXQ9BXM0 1461 aa23.43■■□□□ 1.34
GPC3-202ENST00000394299 FGD5Q6ZNL6 1462 aa23.4■■□□□ 1.34
GPC3-202ENST00000394299 CUX2O14529 1486 aa23.39■■□□□ 1.33
GPC3-202ENST00000394299 IGF1RP08069 1367 aa23.33■■□□□ 1.32
GPC3-202ENST00000394299 ERICH3Q5RHP9 1530 aa23.3■■□□□ 1.32
GPC3-202ENST00000394299 RAD54L2Q9Y4B4 1467 aa23.29■■□□□ 1.32
GPC3-202ENST00000394299 TOPBP1Q92547 1522 aa23.25■■□□□ 1.31
GPC3-202ENST00000394299 VPS8Q8N3P4 1428 aa23.25■■□□□ 1.31
GPC3-202ENST00000394299 DNMBPQ6XZF7 1577 aa23.22■■□□□ 1.31
GPC3-202ENST00000394299 LAMC3Q9Y6N6 1575 aa23.22■■□□□ 1.31
GPC3-202ENST00000394299 POLA1P09884 1462 aaPredicted RBP23.21■■□□□ 1.31
GPC3-202ENST00000394299 CARMIL1Q5VZK9 1371 aa23.2■■□□□ 1.3
GPC3-202ENST00000394299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.2■■□□□ 1.3
GPC3-202ENST00000394299 URB2Q14146 1524 aaKnown RBP23.18■■□□□ 1.3
GPC3-202ENST00000394299 APLP2Q06481 763 aa23.15■■□□□ 1.3
GPC3-202ENST00000394299 ARAP1Q96P48 1450 aa23.15■■□□□ 1.3
GPC3-202ENST00000394299 PDS5BQ9NTI5 1447 aa23.13■■□□□ 1.29
GPC3-202ENST00000394299 ABCA10Q8WWZ4 1543 aa23.1■■□□□ 1.29
GPC3-202ENST00000394299 ZEB1P37275 1124 aaPredicted RBP23.09■■□□□ 1.29
GPC3-202ENST00000394299 ARHGAP35Q9NRY4 1499 aa23.06■■□□□ 1.28
GPC3-202ENST00000394299 TDRD9Q8NDG6 1382 aaKnown RBP23.06■■□□□ 1.28
GPC3-202ENST00000394299 KIF21AQ7Z4S6 1674 aa23.05■■□□□ 1.28
GPC3-202ENST00000394299 CCER1Q8TC90 406 aaPredicted RBP23.04■■□□□ 1.28
GPC3-202ENST00000394299 KANK4Q5T7N3 995 aaPredicted RBP23.03■■□□□ 1.28
GPC3-202ENST00000394299 HNRNPUL2Q1KMD3 747 aaKnown RBP23■■□□□ 1.27
GPC3-202ENST00000394299 P3H3Q8IVL6 736 aa22.99■■□□□ 1.27
GPC3-202ENST00000394299 GAPVD1Q14C86 1478 aa22.88■■□□□ 1.25
GPC3-202ENST00000394299 WDR97A6NE52 1622 aa22.88■■□□□ 1.25
GPC3-202ENST00000394299 ABCA5Q8WWZ7 1642 aa22.83■■□□□ 1.25
GPC3-202ENST00000394299 ATP1B4Q9UN42 357 aaPredicted RBP22.81■■□□□ 1.24
GPC3-202ENST00000394299 CUL7Q14999 1698 aa22.81■■□□□ 1.24
GPC3-202ENST00000394299 TARBP1Q13395 1621 aaKnown RBP22.8■■□□□ 1.24
GPC3-202ENST00000394299 AQRO60306 1485 aaKnown RBP eCLIP22.8■■□□□ 1.242e-10■■■■□ 21.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms