RNA–Protein interactions for RNA: ENST00000370818.7

GPC3-201, Transcript of glypican 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC3, Length 2,568 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-201ENST00000370818 NISCHQ9Y2I1 1504 aa27.91■■■□□ 2.06
GPC3-201ENST00000370818 CCDC180Q9P1Z9 1646 aa24.02■■□□□ 1.44
GPC3-201ENST00000370818 ZCCHC6Q5VYS8 1495 aaKnown RBP23.53■■□□□ 1.36
GPC3-201ENST00000370818 SHROOM4Q9ULL8 1493 aa23.2■■□□□ 1.3
GPC3-201ENST00000370818 DCAF8L2P0C7V8 631 aa23.03■■□□□ 1.28
GPC3-201ENST00000370818 DCAF1Q9Y4B6 1507 aa23.01■■□□□ 1.27
GPC3-201ENST00000370818 MYO15BQ96JP2 1530 aa22.57■■□□□ 1.2
GPC3-201ENST00000370818 ABCC9O60706 1549 aa22.52■■□□□ 1.2
GPC3-201ENST00000370818 SUPT5HO00267 1087 aaKnown RBP22.51■■□□□ 1.19
GPC3-201ENST00000370818 NACADO15069 1562 aa22.32■■□□□ 1.16
GPC3-201ENST00000370818 SCRIBQ14160 1630 aa22.29■■□□□ 1.16
GPC3-201ENST00000370818 RB1CC1Q8TDY2 1594 aa22.03■■□□□ 1.12
GPC3-201ENST00000370818 RSF1Q96T23 1441 aaPredicted RBP21.87■■□□□ 1.09
GPC3-201ENST00000370818 CHIC1Q5VXU3 224 aa21.75■■□□□ 1.07
GPC3-201ENST00000370818 CECR2Q9BXF3 1484 aa21.74■■□□□ 1.07
GPC3-201ENST00000370818 UNC13AQ9UPW8 1703 aa21.64■■□□□ 1.05
GPC3-201ENST00000370818 MROH2BQ7Z745 1585 aa21.63■■□□□ 1.05
GPC3-201ENST00000370818 BAZ1AQ9NRL2 1556 aaPredicted RBP21.48■■□□□ 1.03
GPC3-201ENST00000370818 WIZO95785 1651 aa21.45■■□□□ 1.02
GPC3-201ENST00000370818 BICRAQ9NZM4 1560 aa21.45■■□□□ 1.02
GPC3-201ENST00000370818 PABPN1Q86U42 306 aaKnown RBP eCLIP21.39■■□□□ 1.012e-6■■□□□ 12
GPC3-201ENST00000370818 SMARCA4P51532 1647 aa21.35■■□□□ 1.01
GPC3-201ENST00000370818 TOP2AP11388 1531 aaKnown RBP21.19■□□□□ 0.98
GPC3-201ENST00000370818 TRIM41Q8WV44 630 aa21.08■□□□□ 0.96
GPC3-201ENST00000370818 PEG3Q9GZU2 1588 aa21.05■□□□□ 0.96
GPC3-201ENST00000370818 CCDC88BA6NC98 1476 aa21.05■□□□□ 0.96
GPC3-201ENST00000370818 EIF4G1Q04637 1599 aaKnown RBP21.04■□□□□ 0.96
GPC3-201ENST00000370818 SMARCA2P51531 1590 aa21.04■□□□□ 0.96
GPC3-201ENST00000370818 LOC105371045A0A1W2PR82 267 aa21■□□□□ 0.95
GPC3-201ENST00000370818 ATAD2BQ9ULI0 1458 aa20.93■□□□□ 0.94
GPC3-201ENST00000370818 HRCP23327 699 aa20.82■□□□□ 0.92
GPC3-201ENST00000370818 BAZ1BQ9UIG0 1483 aaKnown RBP20.81■□□□□ 0.92
GPC3-201ENST00000370818 FAM9AQ8IZU1 332 aaPredicted RBP20.78■□□□□ 0.92
GPC3-201ENST00000370818 ABCC8Q09428 1581 aa20.76■□□□□ 0.91
GPC3-201ENST00000370818 NCAPD3P42695 1498 aa20.66■□□□□ 0.9
GPC3-201ENST00000370818 HMGXB3Q12766 1538 aa20.62■□□□□ 0.89
GPC3-201ENST00000370818 WRNQ14191 1432 aaPredicted RBP eCLIP20.54■□□□□ 0.88
GPC3-201ENST00000370818 EHMT2Q96KQ7 1210 aa20.53■□□□□ 0.88
GPC3-201ENST00000370818 SOGA1O94964 1423 aa20.49■□□□□ 0.87
GPC3-201ENST00000370818 PELP1Q8IZL8 1130 aaKnown RBP20.46■□□□□ 0.87
GPC3-201ENST00000370818 SYNJ1O43426 1573 aa20.45■□□□□ 0.86
GPC3-201ENST00000370818 PCGF6Q9BYE7 350 aa20.44■□□□□ 0.86
GPC3-201ENST00000370818 RUSC2Q8N2Y8 1516 aa20.4■□□□□ 0.86
GPC3-201ENST00000370818 EEA1Q15075 1411 aa20.39■□□□□ 0.85
GPC3-201ENST00000370818 CC2D2AQ9P2K1 1620 aa20.34■□□□□ 0.85
GPC3-201ENST00000370818 CFTRP13569 1480 aa20.33■□□□□ 0.85
GPC3-201ENST00000370818 CSRNP3Q8WYN3 585 aa20.33■□□□□ 0.85
GPC3-201ENST00000370818 PPARGC1BQ86YN6 1023 aaKnown RBP20.33■□□□□ 0.84
GPC3-201ENST00000370818 TOP2BQ02880 1626 aa20.28■□□□□ 0.84
GPC3-201ENST00000370818 TRIM26Q12899 539 aaPredicted RBP20.27■□□□□ 0.83
GPC3-201ENST00000370818 BIVM-ERCC5R4GMW8 1640 aa20.23■□□□□ 0.83
GPC3-201ENST00000370818 TNIKQ9UKE5 1360 aa20.21■□□□□ 0.83
GPC3-201ENST00000370818 CUX1P39880 1505 aa20.18■□□□□ 0.82
GPC3-201ENST00000370818 CADPSQ9ULU8 1353 aa20.18■□□□□ 0.82
GPC3-201ENST00000370818 GOLGA3Q08378 1498 aa20.17■□□□□ 0.82
GPC3-201ENST00000370818 CEP162Q5TB80 1403 aa20.16■□□□□ 0.82
GPC3-201ENST00000370818 CEP164Q9UPV0 1460 aa20.12■□□□□ 0.81
GPC3-201ENST00000370818 UBTFP17480 764 aaKnown RBP20.12■□□□□ 0.81
GPC3-201ENST00000370818 PRDM2Q13029 1718 aa20.12■□□□□ 0.81
GPC3-201ENST00000370818 KIF21BO75037 1637 aa20.12■□□□□ 0.81
GPC3-201ENST00000370818 RAPGEF2Q9Y4G8 1499 aa20.03■□□□□ 0.8
GPC3-201ENST00000370818 KIF27Q86VH2 1401 aa19.96■□□□□ 0.79
GPC3-201ENST00000370818 PRXQ9BXM0 1461 aa19.96■□□□□ 0.79
GPC3-201ENST00000370818 FANCD2Q9BXW9 1451 aa19.96■□□□□ 0.79
GPC3-201ENST00000370818 NESP48681 1621 aa19.93■□□□□ 0.78
GPC3-201ENST00000370818 ERICH3Q5RHP9 1530 aa19.91■□□□□ 0.78
GPC3-201ENST00000370818 CLIP1P30622 1438 aa19.9■□□□□ 0.78
GPC3-201ENST00000370818 DNAJC5BQ9UF47 199 aa19.9■□□□□ 0.78
GPC3-201ENST00000370818 FGD5Q6ZNL6 1462 aa19.89■□□□□ 0.77
GPC3-201ENST00000370818 CUX2O14529 1486 aa19.84■□□□□ 0.77
GPC3-201ENST00000370818 LAMC3Q9Y6N6 1575 aa19.84■□□□□ 0.77
GPC3-201ENST00000370818 SCAF1Q9H7N4 1312 aaKnown RBP19.82■□□□□ 0.76
GPC3-201ENST00000370818 DNMBPQ6XZF7 1577 aa19.81■□□□□ 0.76
GPC3-201ENST00000370818 IGF1RP08069 1367 aa19.79■□□□□ 0.76
GPC3-201ENST00000370818 TOPBP1Q92547 1522 aa19.78■□□□□ 0.76
GPC3-201ENST00000370818 VPS8Q8N3P4 1428 aa19.77■□□□□ 0.76
GPC3-201ENST00000370818 RANGAP1P46060 587 aaPredicted RBP19.75■□□□□ 0.75
GPC3-201ENST00000370818 TTBK1Q5TCY1 1321 aaPredicted RBP19.74■□□□□ 0.75
GPC3-201ENST00000370818 MYT1Q01538 1121 aa19.74■□□□□ 0.75
GPC3-201ENST00000370818 POLA1P09884 1462 aaPredicted RBP19.74■□□□□ 0.75
GPC3-201ENST00000370818 RAD54L2Q9Y4B4 1467 aa19.72■□□□□ 0.75
GPC3-201ENST00000370818 URB2Q14146 1524 aaKnown RBP19.71■□□□□ 0.75
GPC3-201ENST00000370818 PDS5BQ9NTI5 1447 aa19.7■□□□□ 0.74
GPC3-201ENST00000370818 ABCA10Q8WWZ4 1543 aa19.69■□□□□ 0.74
GPC3-201ENST00000370818 CARMIL1Q5VZK9 1371 aa19.68■□□□□ 0.74
GPC3-201ENST00000370818 ARAP1Q96P48 1450 aa19.66■□□□□ 0.74
GPC3-201ENST00000370818 KIF21AQ7Z4S6 1674 aa19.6■□□□□ 0.73
GPC3-201ENST00000370818 ZEB1P37275 1124 aaPredicted RBP19.59■□□□□ 0.73
GPC3-201ENST00000370818 ARHGAP35Q9NRY4 1499 aa19.59■□□□□ 0.73
GPC3-201ENST00000370818 APLP2Q06481 763 aa19.56■□□□□ 0.72
GPC3-201ENST00000370818 WDR97A6NE52 1622 aa19.56■□□□□ 0.72
GPC3-201ENST00000370818 TDRD9Q8NDG6 1382 aaKnown RBP19.49■□□□□ 0.71
GPC3-201ENST00000370818 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.49■□□□□ 0.71
GPC3-201ENST00000370818 ABCA5Q8WWZ7 1642 aa19.48■□□□□ 0.71
GPC3-201ENST00000370818 CUL7Q14999 1698 aa19.48■□□□□ 0.71
GPC3-201ENST00000370818 GAPVD1Q14C86 1478 aa19.45■□□□□ 0.7
GPC3-201ENST00000370818 TARBP1Q13395 1621 aaKnown RBP19.44■□□□□ 0.7
GPC3-201ENST00000370818 KANK4Q5T7N3 995 aaPredicted RBP19.43■□□□□ 0.7
GPC3-201ENST00000370818 MRC2Q9UBG0 1479 aa19.43■□□□□ 0.7
GPC3-201ENST00000370818 CCER1Q8TC90 406 aaPredicted RBP19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms