Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC16.62■□□□□ 0.25
VPS13DQ5THJ4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS13DQ5THJ4 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS13DQ5THJ4 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13DQ5THJ4 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13DQ5THJ4 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13DQ5THJ4 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13DQ5THJ4 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13DQ5THJ4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13DQ5THJ4 MIR638-201ENST00000385237 100 ntBASIC16.6■□□□□ 0.25
VPS13DQ5THJ4 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13DQ5THJ4 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VPS13DQ5THJ4 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
VPS13DQ5THJ4 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS13DQ5THJ4 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13DQ5THJ4 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13DQ5THJ4 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS13DQ5THJ4 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13DQ5THJ4 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13DQ5THJ4 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13DQ5THJ4 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13DQ5THJ4 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13DQ5THJ4 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13DQ5THJ4 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS13DQ5THJ4 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13DQ5THJ4 UNC93B8-201ENST00000511903 705 ntBASIC16.59■□□□□ 0.25
VPS13DQ5THJ4 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13DQ5THJ4 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13DQ5THJ4 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13DQ5THJ4 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
VPS13DQ5THJ4 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC16.58■□□□□ 0.25
VPS13DQ5THJ4 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.25
VPS13DQ5THJ4 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
VPS13DQ5THJ4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC16.58■□□□□ 0.25
VPS13DQ5THJ4 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
VPS13DQ5THJ4 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13DQ5THJ4 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13DQ5THJ4 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
VPS13DQ5THJ4 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
VPS13DQ5THJ4 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS13DQ5THJ4 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS13DQ5THJ4 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS13DQ5THJ4 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13DQ5THJ4 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13DQ5THJ4 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13DQ5THJ4 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
VPS13DQ5THJ4 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS13DQ5THJ4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
VPS13DQ5THJ4 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13DQ5THJ4 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
VPS13DQ5THJ4 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13DQ5THJ4 AC131281.2-201ENST00000520478 145 ntBASIC16.56■□□□□ 0.24
VPS13DQ5THJ4 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS13DQ5THJ4 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS13DQ5THJ4 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS13DQ5THJ4 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13DQ5THJ4 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
VPS13DQ5THJ4 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13DQ5THJ4 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13DQ5THJ4 AL449106.1-201ENST00000608517 1980 ntBASIC16.55■□□□□ 0.24
VPS13DQ5THJ4 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13DQ5THJ4 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13DQ5THJ4 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13DQ5THJ4 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13DQ5THJ4 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13DQ5THJ4 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13DQ5THJ4 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
VPS13DQ5THJ4 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS13DQ5THJ4 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS13DQ5THJ4 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13DQ5THJ4 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
VPS13DQ5THJ4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13DQ5THJ4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC16.54■□□□□ 0.24
VPS13DQ5THJ4 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VPS13DQ5THJ4 RALB-208ENST00000631312 311 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS13DQ5THJ4 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13DQ5THJ4 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13DQ5THJ4 KRT125P-201ENST00000546827 989 ntBASIC16.54■□□□□ 0.24
VPS13DQ5THJ4 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13DQ5THJ4 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13DQ5THJ4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13DQ5THJ4 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13DQ5THJ4 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13DQ5THJ4 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS13DQ5THJ4 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS13DQ5THJ4 AC008406.3-201ENST00000620001 1374 ntBASIC16.52■□□□□ 0.24
VPS13DQ5THJ4 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS13DQ5THJ4 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS13DQ5THJ4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS13DQ5THJ4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS13DQ5THJ4 PROC-203ENST00000409048 1586 ntTSL 5 BASIC16.52■□□□□ 0.23
VPS13DQ5THJ4 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS13DQ5THJ4 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS13DQ5THJ4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS13DQ5THJ4 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC16.52■□□□□ 0.23
VPS13DQ5THJ4 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC16.52■□□□□ 0.23
VPS13DQ5THJ4 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC16.52■□□□□ 0.23
VPS13DQ5THJ4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC16.52■□□□□ 0.23
VPS13DQ5THJ4 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13DQ5THJ4 AC137630.3-201ENST00000607245 391 ntBASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms