Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AL117332.1-201ENST00000622628 974 ntBASIC30.31■■■□□ 2.44
BRCA1P38398 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
BRCA1P38398 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.31■■■□□ 2.44
BRCA1P38398 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
BRCA1P38398 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC30.3■■■□□ 2.44
BRCA1P38398 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC30.3■■■□□ 2.44
BRCA1P38398 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC30.3■■■□□ 2.44
BRCA1P38398 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC30.3■■■□□ 2.44
BRCA1P38398 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
BRCA1P38398 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
BRCA1P38398 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
BRCA1P38398 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC30.29■■■□□ 2.44
BRCA1P38398 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
BRCA1P38398 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC30.27■■■□□ 2.44
BRCA1P38398 KRT18P24-201ENST00000344739 1156 ntBASIC30.27■■■□□ 2.44
BRCA1P38398 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC30.27■■■□□ 2.44
BRCA1P38398 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC30.27■■■□□ 2.44
BRCA1P38398 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
BRCA1P38398 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
BRCA1P38398 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
BRCA1P38398 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
BRCA1P38398 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
BRCA1P38398 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
BRCA1P38398 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC30.26■■■□□ 2.43
BRCA1P38398 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
BRCA1P38398 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.43
BRCA1P38398 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC30.25■■■□□ 2.43
BRCA1P38398 RPP21-222ENST00000433076 577 ntTSL 2 BASIC30.25■■■□□ 2.43
BRCA1P38398 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
BRCA1P38398 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC30.25■■■□□ 2.43
BRCA1P38398 TSPY9P-201ENST00000440215 945 ntBASIC30.25■■■□□ 2.43
BRCA1P38398 TSPY11P-201ENST00000442607 1045 ntBASIC30.25■■■□□ 2.43
BRCA1P38398 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC30.25■■■□□ 2.43
BRCA1P38398 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC30.25■■■□□ 2.43
BRCA1P38398 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC30.25■■■□□ 2.43
BRCA1P38398 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
BRCA1P38398 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
BRCA1P38398 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
BRCA1P38398 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
BRCA1P38398 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
BRCA1P38398 ABCB10P3-201ENST00000561950 2166 ntBASIC30.24■■■□□ 2.43
BRCA1P38398 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
BRCA1P38398 MIR4466-201ENST00000606121 54 ntBASIC30.23■■■□□ 2.43
BRCA1P38398 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC30.23■■■□□ 2.43
BRCA1P38398 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
BRCA1P38398 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC30.23■■■□□ 2.43
BRCA1P38398 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
BRCA1P38398 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
BRCA1P38398 MIR4281-201ENST00000580852 62 ntBASIC30.22■■■□□ 2.43
BRCA1P38398 AL512631.2-201ENST00000604634 923 ntBASIC30.22■■■□□ 2.43
BRCA1P38398 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
BRCA1P38398 QDPR-206ENST00000508623 601 ntTSL 3 BASIC30.21■■■□□ 2.43
BRCA1P38398 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
BRCA1P38398 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC30.21■■■□□ 2.43
BRCA1P38398 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC30.21■■■□□ 2.43
BRCA1P38398 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC30.2■■■□□ 2.43
BRCA1P38398 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.43
BRCA1P38398 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
BRCA1P38398 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.2■■■□□ 2.42
BRCA1P38398 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC30.2■■■□□ 2.42
BRCA1P38398 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
BRCA1P38398 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC30.19■■■□□ 2.42
BRCA1P38398 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
BRCA1P38398 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC30.19■■■□□ 2.42
BRCA1P38398 AC092028.1-203ENST00000608262 953 ntBASIC30.19■■■□□ 2.42
BRCA1P38398 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
BRCA1P38398 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC30.18■■■□□ 2.42
BRCA1P38398 GUK1-205ENST00000366722 850 ntTSL 3 BASIC30.18■■■□□ 2.42
BRCA1P38398 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
BRCA1P38398 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
BRCA1P38398 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.17■■■□□ 2.42
BRCA1P38398 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
BRCA1P38398 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
BRCA1P38398 AC026271.2-201ENST00000428091 497 ntBASIC30.16■■■□□ 2.42
BRCA1P38398 AC096631.2-201ENST00000436136 790 ntBASIC30.16■■■□□ 2.42
BRCA1P38398 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
BRCA1P38398 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC30.16■■■□□ 2.42
BRCA1P38398 ZNRF2P3-201ENST00000424200 374 ntBASIC30.16■■■□□ 2.42
BRCA1P38398 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC30.16■■■□□ 2.42
BRCA1P38398 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.16■■■□□ 2.42
BRCA1P38398 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
BRCA1P38398 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
BRCA1P38398 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC30.15■■■□□ 2.42
BRCA1P38398 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC30.15■■■□□ 2.42
BRCA1P38398 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC30.15■■■□□ 2.42
BRCA1P38398 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC30.14■■■□□ 2.42
BRCA1P38398 MIR3621-201ENST00000580529 85 ntBASIC30.14■■■□□ 2.42
BRCA1P38398 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
BRCA1P38398 SENP5-202ENST00000419026 973 ntTSL 3 BASIC30.14■■■□□ 2.42
BRCA1P38398 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
BRCA1P38398 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
BRCA1P38398 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
BRCA1P38398 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC30.13■■■□□ 2.41
BRCA1P38398 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
BRCA1P38398 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
BRCA1P38398 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
BRCA1P38398 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
BRCA1P38398 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC30.12■■■□□ 2.41
BRCA1P38398 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC30.12■■■□□ 2.41
BRCA1P38398 MIR6724-1-201ENST00000616420 92 ntBASIC30.12■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 136.7 ms