Protein–RNA interactions for Protein: Q9Y5N1

HRH3, Histamine H3 receptor, humanhuman

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HRH3Q9Y5N1 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
HRH3Q9Y5N1 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
HRH3Q9Y5N1 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
HRH3Q9Y5N1 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
HRH3Q9Y5N1 AL121749.1-202ENST00000609313 2153 ntBASIC22.41■■□□□ 1.18
HRH3Q9Y5N1 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
HRH3Q9Y5N1 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
HRH3Q9Y5N1 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC22.41■■□□□ 1.18
HRH3Q9Y5N1 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HRH3Q9Y5N1 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC22.41■■□□□ 1.18
HRH3Q9Y5N1 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.41■■□□□ 1.18
HRH3Q9Y5N1 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.41■■□□□ 1.18
HRH3Q9Y5N1 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HRH3Q9Y5N1 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
HRH3Q9Y5N1 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
HRH3Q9Y5N1 AC007029.1-201ENST00000604183 313 ntBASIC22.4■■□□□ 1.18
HRH3Q9Y5N1 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
HRH3Q9Y5N1 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
HRH3Q9Y5N1 AP004609.3-201ENST00000610705 1884 ntBASIC22.4■■□□□ 1.18
HRH3Q9Y5N1 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC22.4■■□□□ 1.18
HRH3Q9Y5N1 SMPD5-203ENST00000639008 1464 ntBASIC22.4■■□□□ 1.18
HRH3Q9Y5N1 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
HRH3Q9Y5N1 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
HRH3Q9Y5N1 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
HRH3Q9Y5N1 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.4■■□□□ 1.18
HRH3Q9Y5N1 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.18
HRH3Q9Y5N1 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC22.39■■□□□ 1.18
HRH3Q9Y5N1 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
HRH3Q9Y5N1 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
HRH3Q9Y5N1 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
HRH3Q9Y5N1 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.38■■□□□ 1.17
HRH3Q9Y5N1 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
HRH3Q9Y5N1 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC22.38■■□□□ 1.17
HRH3Q9Y5N1 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC22.38■■□□□ 1.17
HRH3Q9Y5N1 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC22.38■■□□□ 1.17
HRH3Q9Y5N1 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HRH3Q9Y5N1 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22.38■■□□□ 1.17
HRH3Q9Y5N1 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.37■■□□□ 1.17
HRH3Q9Y5N1 AC142472.1-201ENST00000612013 1741 ntBASIC22.37■■□□□ 1.17
HRH3Q9Y5N1 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
HRH3Q9Y5N1 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HRH3Q9Y5N1 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
HRH3Q9Y5N1 GUK1-208ENST00000366728 842 ntTSL 2 BASIC22.37■■□□□ 1.17
HRH3Q9Y5N1 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC22.37■■□□□ 1.17
HRH3Q9Y5N1 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
HRH3Q9Y5N1 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
HRH3Q9Y5N1 AC009831.1-201ENST00000580420 1582 ntBASIC22.37■■□□□ 1.17
HRH3Q9Y5N1 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HRH3Q9Y5N1 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
HRH3Q9Y5N1 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
HRH3Q9Y5N1 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC22.36■■□□□ 1.17
HRH3Q9Y5N1 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC22.36■■□□□ 1.17
HRH3Q9Y5N1 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC22.36■■□□□ 1.17
HRH3Q9Y5N1 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
HRH3Q9Y5N1 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
HRH3Q9Y5N1 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
HRH3Q9Y5N1 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
HRH3Q9Y5N1 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
HRH3Q9Y5N1 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.35■■□□□ 1.17
HRH3Q9Y5N1 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
HRH3Q9Y5N1 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
HRH3Q9Y5N1 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HRH3Q9Y5N1 AL592293.1-201ENST00000502889 1188 ntBASIC22.34■■□□□ 1.17
HRH3Q9Y5N1 AC133552.2-201ENST00000619106 1032 ntBASIC22.34■■□□□ 1.17
HRH3Q9Y5N1 AC129492.7-201ENST00000622992 756 ntBASIC22.34■■□□□ 1.17
HRH3Q9Y5N1 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.34■■□□□ 1.17
HRH3Q9Y5N1 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC22.33■■□□□ 1.17
HRH3Q9Y5N1 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC22.33■■□□□ 1.17
HRH3Q9Y5N1 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
HRH3Q9Y5N1 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
HRH3Q9Y5N1 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
HRH3Q9Y5N1 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
HRH3Q9Y5N1 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
HRH3Q9Y5N1 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC22.32■■□□□ 1.16
HRH3Q9Y5N1 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
HRH3Q9Y5N1 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
HRH3Q9Y5N1 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
HRH3Q9Y5N1 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
HRH3Q9Y5N1 REST-210ENST00000638187 1334 ntTSL 5 BASIC22.31■■□□□ 1.16
HRH3Q9Y5N1 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC22.31■■□□□ 1.16
HRH3Q9Y5N1 PFN2-211ENST00000489155 636 ntTSL 4 BASIC22.31■■□□□ 1.16
HRH3Q9Y5N1 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HRH3Q9Y5N1 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
HRH3Q9Y5N1 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
HRH3Q9Y5N1 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HRH3Q9Y5N1 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HRH3Q9Y5N1 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HRH3Q9Y5N1 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
HRH3Q9Y5N1 DUX4L18-201ENST00000553347 1267 ntBASIC22.3■■□□□ 1.16
HRH3Q9Y5N1 AC093536.1-201ENST00000569153 554 ntBASIC22.3■■□□□ 1.16
HRH3Q9Y5N1 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC22.3■■□□□ 1.16
HRH3Q9Y5N1 AC026202.3-201ENST00000600805 1127 ntBASIC22.3■■□□□ 1.16
HRH3Q9Y5N1 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
HRH3Q9Y5N1 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
HRH3Q9Y5N1 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HRH3Q9Y5N1 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
HRH3Q9Y5N1 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
HRH3Q9Y5N1 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
HRH3Q9Y5N1 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HRH3Q9Y5N1 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms