Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.65■□□□□ 0.74
FOXA2Q9Y261 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
FOXA2Q9Y261 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXA2Q9Y261 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXA2Q9Y261 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.65■□□□□ 0.74
FOXA2Q9Y261 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
FOXA2Q9Y261 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
FOXA2Q9Y261 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
FOXA2Q9Y261 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
FOXA2Q9Y261 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA2Q9Y261 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA2Q9Y261 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA2Q9Y261 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA2Q9Y261 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA2Q9Y261 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA2Q9Y261 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA2Q9Y261 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA2Q9Y261 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA2Q9Y261 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA2Q9Y261 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA2Q9Y261 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA2Q9Y261 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA2Q9Y261 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA2Q9Y261 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.63■□□□□ 0.73
FOXA2Q9Y261 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA2Q9Y261 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
FOXA2Q9Y261 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA2Q9Y261 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
FOXA2Q9Y261 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.63■□□□□ 0.73
FOXA2Q9Y261 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA2Q9Y261 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA2Q9Y261 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA2Q9Y261 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA2Q9Y261 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC19.62■□□□□ 0.73
FOXA2Q9Y261 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA2Q9Y261 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.62■□□□□ 0.73
FOXA2Q9Y261 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA2Q9Y261 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
FOXA2Q9Y261 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA2Q9Y261 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA2Q9Y261 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA2Q9Y261 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA2Q9Y261 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
FOXA2Q9Y261 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.61■□□□□ 0.73
FOXA2Q9Y261 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.61■□□□□ 0.73
FOXA2Q9Y261 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.61■□□□□ 0.73
FOXA2Q9Y261 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.6■□□□□ 0.73
FOXA2Q9Y261 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
FOXA2Q9Y261 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC19.6■□□□□ 0.73
FOXA2Q9Y261 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
FOXA2Q9Y261 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
FOXA2Q9Y261 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
FOXA2Q9Y261 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC19.6■□□□□ 0.73
FOXA2Q9Y261 AC010501.1-201ENST00000606270 1962 ntBASIC19.6■□□□□ 0.73
FOXA2Q9Y261 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
FOXA2Q9Y261 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA2Q9Y261 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA2Q9Y261 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA2Q9Y261 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA2Q9Y261 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC19.59■□□□□ 0.73
FOXA2Q9Y261 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA2Q9Y261 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA2Q9Y261 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA2Q9Y261 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA2Q9Y261 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA2Q9Y261 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
FOXA2Q9Y261 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
FOXA2Q9Y261 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
FOXA2Q9Y261 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC19.58■□□□□ 0.73
FOXA2Q9Y261 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
FOXA2Q9Y261 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
FOXA2Q9Y261 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
FOXA2Q9Y261 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
FOXA2Q9Y261 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA2Q9Y261 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA2Q9Y261 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA2Q9Y261 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA2Q9Y261 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.57■□□□□ 0.72
FOXA2Q9Y261 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA2Q9Y261 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA2Q9Y261 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC19.57■□□□□ 0.72
FOXA2Q9Y261 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA2Q9Y261 AC126177.7-201ENST00000547904 679 ntBASIC19.56■□□□□ 0.72
FOXA2Q9Y261 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
FOXA2Q9Y261 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA2Q9Y261 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA2Q9Y261 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
FOXA2Q9Y261 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
FOXA2Q9Y261 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
FOXA2Q9Y261 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
FOXA2Q9Y261 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.54■□□□□ 0.72
FOXA2Q9Y261 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.54■□□□□ 0.72
FOXA2Q9Y261 ERN1-208ENST00000606895 2068 ntBASIC19.54■□□□□ 0.72
FOXA2Q9Y261 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
FOXA2Q9Y261 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
FOXA2Q9Y261 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA2Q9Y261 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA2Q9Y261 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA2Q9Y261 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA2Q9Y261 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms