Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC17.28■□□□□ 0.36
CSMD3Q7Z407 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CSMD3Q7Z407 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CSMD3Q7Z407 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC17.27■□□□□ 0.36
CSMD3Q7Z407 AL359504.2-201ENST00000605506 1601 ntBASIC17.27■□□□□ 0.35
CSMD3Q7Z407 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CSMD3Q7Z407 AC131281.2-201ENST00000520478 145 ntBASIC17.26■□□□□ 0.35
CSMD3Q7Z407 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC17.26■□□□□ 0.35
CSMD3Q7Z407 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CSMD3Q7Z407 AL139393.2-201ENST00000608721 2025 ntBASIC17.26■□□□□ 0.35
CSMD3Q7Z407 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CSMD3Q7Z407 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC17.26■□□□□ 0.35
CSMD3Q7Z407 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC17.26■□□□□ 0.35
CSMD3Q7Z407 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CSMD3Q7Z407 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CSMD3Q7Z407 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CSMD3Q7Z407 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC17.25■□□□□ 0.35
CSMD3Q7Z407 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC17.25■□□□□ 0.35
CSMD3Q7Z407 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC17.25■□□□□ 0.35
CSMD3Q7Z407 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CSMD3Q7Z407 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CSMD3Q7Z407 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC17.25■□□□□ 0.35
CSMD3Q7Z407 AP004833.2-201ENST00000532228 1454 ntBASIC17.25■□□□□ 0.35
CSMD3Q7Z407 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CSMD3Q7Z407 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CSMD3Q7Z407 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CSMD3Q7Z407 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC17.24■□□□□ 0.35
CSMD3Q7Z407 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC17.24■□□□□ 0.35
CSMD3Q7Z407 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CSMD3Q7Z407 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC17.24■□□□□ 0.35
CSMD3Q7Z407 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC17.24■□□□□ 0.35
CSMD3Q7Z407 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CSMD3Q7Z407 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
CSMD3Q7Z407 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CSMD3Q7Z407 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CSMD3Q7Z407 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CSMD3Q7Z407 AL139246.5-201ENST00000606645 996 ntBASIC17.23■□□□□ 0.35
CSMD3Q7Z407 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC17.23■□□□□ 0.35
CSMD3Q7Z407 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CSMD3Q7Z407 AC022616.5-201ENST00000518796 181 ntBASIC17.23■□□□□ 0.35
CSMD3Q7Z407 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CSMD3Q7Z407 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CSMD3Q7Z407 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC17.22■□□□□ 0.35
CSMD3Q7Z407 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC17.22■□□□□ 0.35
CSMD3Q7Z407 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CSMD3Q7Z407 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CSMD3Q7Z407 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CSMD3Q7Z407 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CSMD3Q7Z407 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CSMD3Q7Z407 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC17.21■□□□□ 0.35
CSMD3Q7Z407 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC17.21■□□□□ 0.35
CSMD3Q7Z407 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CSMD3Q7Z407 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CSMD3Q7Z407 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CSMD3Q7Z407 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
CSMD3Q7Z407 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CSMD3Q7Z407 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CSMD3Q7Z407 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC17.2■□□□□ 0.34
CSMD3Q7Z407 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CSMD3Q7Z407 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
CSMD3Q7Z407 KRT125P-201ENST00000546827 989 ntBASIC17.19■□□□□ 0.34
CSMD3Q7Z407 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC17.19■□□□□ 0.34
CSMD3Q7Z407 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CSMD3Q7Z407 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CSMD3Q7Z407 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CSMD3Q7Z407 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CSMD3Q7Z407 RARRES2P6-201ENST00000567333 442 ntBASIC17.18■□□□□ 0.34
CSMD3Q7Z407 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CSMD3Q7Z407 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CSMD3Q7Z407 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
CSMD3Q7Z407 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
CSMD3Q7Z407 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CSMD3Q7Z407 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CSMD3Q7Z407 RPS2P7-201ENST00000447334 885 ntBASIC17.17■□□□□ 0.34
CSMD3Q7Z407 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC17.17■□□□□ 0.34
CSMD3Q7Z407 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
CSMD3Q7Z407 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CSMD3Q7Z407 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CSMD3Q7Z407 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CSMD3Q7Z407 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CSMD3Q7Z407 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CSMD3Q7Z407 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
CSMD3Q7Z407 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC17.16■□□□□ 0.34
CSMD3Q7Z407 LONRF2P2-201ENST00000439212 571 ntBASIC17.16■□□□□ 0.34
CSMD3Q7Z407 MIR4466-201ENST00000606121 54 ntBASIC17.16■□□□□ 0.34
CSMD3Q7Z407 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC17.15■□□□□ 0.34
CSMD3Q7Z407 WHAMMP3-201ENST00000611636 1609 ntBASIC17.15■□□□□ 0.34
CSMD3Q7Z407 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CSMD3Q7Z407 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CSMD3Q7Z407 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC17.15■□□□□ 0.34
CSMD3Q7Z407 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
CSMD3Q7Z407 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CSMD3Q7Z407 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CSMD3Q7Z407 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
CSMD3Q7Z407 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC17.15■□□□□ 0.34
CSMD3Q7Z407 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC17.15■□□□□ 0.34
CSMD3Q7Z407 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC17.14■□□□□ 0.34
CSMD3Q7Z407 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC17.14■□□□□ 0.34
CSMD3Q7Z407 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC17.14■□□□□ 0.34
CSMD3Q7Z407 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms