Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM3Q53GG5 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC19.97■□□□□ 0.79
PDLIM3Q53GG5 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC19.97■□□□□ 0.79
PDLIM3Q53GG5 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM3Q53GG5 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM3Q53GG5 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM3Q53GG5 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM3Q53GG5 DUSP8P4-201ENST00000399538 1761 ntBASIC19.95■□□□□ 0.78
PDLIM3Q53GG5 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.95■□□□□ 0.78
PDLIM3Q53GG5 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.95■□□□□ 0.78
PDLIM3Q53GG5 RARRES2P1-201ENST00000474487 481 ntBASIC19.95■□□□□ 0.78
PDLIM3Q53GG5 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC19.95■□□□□ 0.78
PDLIM3Q53GG5 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PDLIM3Q53GG5 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PDLIM3Q53GG5 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC19.95■□□□□ 0.78
PDLIM3Q53GG5 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM3Q53GG5 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM3Q53GG5 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM3Q53GG5 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM3Q53GG5 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC19.94■□□□□ 0.78
PDLIM3Q53GG5 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC19.94■□□□□ 0.78
PDLIM3Q53GG5 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PDLIM3Q53GG5 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PDLIM3Q53GG5 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.93■□□□□ 0.78
PDLIM3Q53GG5 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PDLIM3Q53GG5 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
PDLIM3Q53GG5 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PDLIM3Q53GG5 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PDLIM3Q53GG5 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PDLIM3Q53GG5 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC19.92■□□□□ 0.78
PDLIM3Q53GG5 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC19.92■□□□□ 0.78
PDLIM3Q53GG5 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
PDLIM3Q53GG5 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC19.92■□□□□ 0.78
PDLIM3Q53GG5 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC19.92■□□□□ 0.78
PDLIM3Q53GG5 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC19.92■□□□□ 0.78
PDLIM3Q53GG5 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
PDLIM3Q53GG5 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PDLIM3Q53GG5 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PDLIM3Q53GG5 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
PDLIM3Q53GG5 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PDLIM3Q53GG5 CHML-204ENST00000638121 920 ntTSL 2 BASIC19.91■□□□□ 0.78
PDLIM3Q53GG5 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PDLIM3Q53GG5 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PDLIM3Q53GG5 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.9■□□□□ 0.78
PDLIM3Q53GG5 AC092803.2-201ENST00000564287 1899 ntBASIC19.9■□□□□ 0.78
PDLIM3Q53GG5 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PDLIM3Q53GG5 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PDLIM3Q53GG5 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
PDLIM3Q53GG5 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PDLIM3Q53GG5 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC19.89■□□□□ 0.77
PDLIM3Q53GG5 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PDLIM3Q53GG5 AP004609.3-201ENST00000610705 1884 ntBASIC19.89■□□□□ 0.77
PDLIM3Q53GG5 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PDLIM3Q53GG5 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PDLIM3Q53GG5 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PDLIM3Q53GG5 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
PDLIM3Q53GG5 HES4-202ENST00000428771 1040 ntTSL 2 BASIC19.88■□□□□ 0.77
PDLIM3Q53GG5 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC19.88■□□□□ 0.77
PDLIM3Q53GG5 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.87■□□□□ 0.77
PDLIM3Q53GG5 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
PDLIM3Q53GG5 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDLIM3Q53GG5 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM3Q53GG5 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM3Q53GG5 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM3Q53GG5 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM3Q53GG5 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
PDLIM3Q53GG5 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
PDLIM3Q53GG5 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.85■□□□□ 0.77
PDLIM3Q53GG5 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDLIM3Q53GG5 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDLIM3Q53GG5 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.85■□□□□ 0.77
PDLIM3Q53GG5 AC022413.1-201ENST00000624602 984 ntBASIC19.85■□□□□ 0.77
PDLIM3Q53GG5 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDLIM3Q53GG5 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDLIM3Q53GG5 AC020928.2-201ENST00000588717 2197 ntBASIC19.85■□□□□ 0.77
PDLIM3Q53GG5 AC142472.1-201ENST00000612013 1741 ntBASIC19.85■□□□□ 0.77
PDLIM3Q53GG5 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
PDLIM3Q53GG5 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
PDLIM3Q53GG5 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM3Q53GG5 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM3Q53GG5 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.84■□□□□ 0.77
PDLIM3Q53GG5 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC19.84■□□□□ 0.77
PDLIM3Q53GG5 TSPY13P-201ENST00000338964 914 ntBASIC19.84■□□□□ 0.77
PDLIM3Q53GG5 PEX7-203ENST00000541292 945 ntTSL 5 BASIC19.84■□□□□ 0.77
PDLIM3Q53GG5 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC19.84■□□□□ 0.77
PDLIM3Q53GG5 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM3Q53GG5 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM3Q53GG5 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM3Q53GG5 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PDLIM3Q53GG5 MIR935-201ENST00000401179 91 ntBASIC19.83■□□□□ 0.77
PDLIM3Q53GG5 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
PDLIM3Q53GG5 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
PDLIM3Q53GG5 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
PDLIM3Q53GG5 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PDLIM3Q53GG5 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PDLIM3Q53GG5 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.82■□□□□ 0.76
PDLIM3Q53GG5 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PDLIM3Q53GG5 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.82■□□□□ 0.76
PDLIM3Q53GG5 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PDLIM3Q53GG5 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms