Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC116Q8IYX3 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.13■■□□□ 1.29
CCDC116Q8IYX3 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC116Q8IYX3 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC116Q8IYX3 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC116Q8IYX3 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC116Q8IYX3 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC116Q8IYX3 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC116Q8IYX3 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.12■■□□□ 1.29
CCDC116Q8IYX3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC116Q8IYX3 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC116Q8IYX3 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.12■■□□□ 1.29
CCDC116Q8IYX3 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.12■■□□□ 1.29
CCDC116Q8IYX3 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.12■■□□□ 1.29
CCDC116Q8IYX3 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC116Q8IYX3 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.11■■□□□ 1.29
CCDC116Q8IYX3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.11■■□□□ 1.29
CCDC116Q8IYX3 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC116Q8IYX3 AC126177.7-201ENST00000547904 679 ntBASIC23.11■■□□□ 1.29
CCDC116Q8IYX3 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC116Q8IYX3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC116Q8IYX3 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.11■■□□□ 1.29
CCDC116Q8IYX3 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC116Q8IYX3 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC116Q8IYX3 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC23.1■■□□□ 1.29
CCDC116Q8IYX3 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC116Q8IYX3 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC116Q8IYX3 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.09■■□□□ 1.29
CCDC116Q8IYX3 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.09■■□□□ 1.29
CCDC116Q8IYX3 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC116Q8IYX3 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
CCDC116Q8IYX3 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC116Q8IYX3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CCDC116Q8IYX3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC116Q8IYX3 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC116Q8IYX3 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC116Q8IYX3 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC116Q8IYX3 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC116Q8IYX3 AL359504.2-201ENST00000605506 1601 ntBASIC23.06■■□□□ 1.28
CCDC116Q8IYX3 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
CCDC116Q8IYX3 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.06■■□□□ 1.28
CCDC116Q8IYX3 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC116Q8IYX3 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC116Q8IYX3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC116Q8IYX3 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.05■■□□□ 1.28
CCDC116Q8IYX3 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC116Q8IYX3 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC116Q8IYX3 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
CCDC116Q8IYX3 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.04■■□□□ 1.28
CCDC116Q8IYX3 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC116Q8IYX3 AC091060.1-201ENST00000623524 1766 ntBASIC23.04■■□□□ 1.28
CCDC116Q8IYX3 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.03■■□□□ 1.28
CCDC116Q8IYX3 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC116Q8IYX3 MIR4449-201ENST00000578365 66 ntBASIC23.03■■□□□ 1.28
CCDC116Q8IYX3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC116Q8IYX3 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC116Q8IYX3 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.03■■□□□ 1.28
CCDC116Q8IYX3 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC116Q8IYX3 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC116Q8IYX3 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC116Q8IYX3 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC116Q8IYX3 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC116Q8IYX3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.01■■□□□ 1.27
CCDC116Q8IYX3 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC116Q8IYX3 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC116Q8IYX3 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC116Q8IYX3 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC116Q8IYX3 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23■■□□□ 1.27
CCDC116Q8IYX3 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC116Q8IYX3 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC116Q8IYX3 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23■■□□□ 1.27
CCDC116Q8IYX3 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC116Q8IYX3 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23■■□□□ 1.27
CCDC116Q8IYX3 SRP68-213ENST00000629930 165 ntTSL 5 BASIC23■■□□□ 1.27
CCDC116Q8IYX3 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23■■□□□ 1.27
CCDC116Q8IYX3 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC116Q8IYX3 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC116Q8IYX3 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC116Q8IYX3 AC060814.1-201ENST00000554326 538 ntBASIC22.99■■□□□ 1.27
CCDC116Q8IYX3 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC116Q8IYX3 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC116Q8IYX3 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC116Q8IYX3 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.98■■□□□ 1.27
CCDC116Q8IYX3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC116Q8IYX3 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC116Q8IYX3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC116Q8IYX3 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC116Q8IYX3 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC116Q8IYX3 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC116Q8IYX3 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC22.97■■□□□ 1.27
CCDC116Q8IYX3 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC116Q8IYX3 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC22.97■■□□□ 1.27
CCDC116Q8IYX3 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC22.97■■□□□ 1.27
CCDC116Q8IYX3 AC092803.2-201ENST00000564287 1899 ntBASIC22.96■■□□□ 1.27
CCDC116Q8IYX3 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC116Q8IYX3 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC116Q8IYX3 AC022413.1-201ENST00000624602 984 ntBASIC22.96■■□□□ 1.27
CCDC116Q8IYX3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC116Q8IYX3 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC22.96■■□□□ 1.27
CCDC116Q8IYX3 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms