Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.83■□□□□ 0.92
VPS13CQ709C8 ABCB10P1-201ENST00000614297 2181 ntBASIC20.83■□□□□ 0.92
VPS13CQ709C8 YBX1P4-201ENST00000392794 808 ntBASIC20.83■□□□□ 0.92
VPS13CQ709C8 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VPS13CQ709C8 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS13CQ709C8 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS13CQ709C8 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS13CQ709C8 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
VPS13CQ709C8 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
VPS13CQ709C8 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS13CQ709C8 AL139393.2-201ENST00000608721 2025 ntBASIC20.81■□□□□ 0.92
VPS13CQ709C8 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS13CQ709C8 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS13CQ709C8 MIR638-201ENST00000385237 100 ntBASIC20.81■□□□□ 0.92
VPS13CQ709C8 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
VPS13CQ709C8 AC008406.3-201ENST00000620001 1374 ntBASIC20.8■□□□□ 0.92
VPS13CQ709C8 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC20.8■□□□□ 0.92
VPS13CQ709C8 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC20.8■□□□□ 0.92
VPS13CQ709C8 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS13CQ709C8 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.8■□□□□ 0.92
VPS13CQ709C8 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS13CQ709C8 AL031848.2-201ENST00000607670 837 ntBASIC20.8■□□□□ 0.92
VPS13CQ709C8 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS13CQ709C8 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
VPS13CQ709C8 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS13CQ709C8 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS13CQ709C8 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
VPS13CQ709C8 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
VPS13CQ709C8 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS13CQ709C8 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS13CQ709C8 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS13CQ709C8 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS13CQ709C8 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS13CQ709C8 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS13CQ709C8 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.78■□□□□ 0.92
VPS13CQ709C8 AC074183.2-201ENST00000623112 922 ntBASIC20.77■□□□□ 0.92
VPS13CQ709C8 MIR3960-201ENST00000583311 91 ntBASIC20.77■□□□□ 0.92
VPS13CQ709C8 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS13CQ709C8 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS13CQ709C8 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.77■□□□□ 0.92
VPS13CQ709C8 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS13CQ709C8 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS13CQ709C8 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
VPS13CQ709C8 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS13CQ709C8 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
VPS13CQ709C8 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS13CQ709C8 AC139426.1-201ENST00000568218 2529 ntBASIC20.76■□□□□ 0.91
VPS13CQ709C8 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
VPS13CQ709C8 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS13CQ709C8 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS13CQ709C8 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS13CQ709C8 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
VPS13CQ709C8 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS13CQ709C8 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.74■□□□□ 0.91
VPS13CQ709C8 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS13CQ709C8 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS13CQ709C8 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.73■□□□□ 0.91
VPS13CQ709C8 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
VPS13CQ709C8 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS13CQ709C8 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS13CQ709C8 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS13CQ709C8 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS13CQ709C8 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS13CQ709C8 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.72■□□□□ 0.91
VPS13CQ709C8 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS13CQ709C8 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS13CQ709C8 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS13CQ709C8 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS13CQ709C8 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS13CQ709C8 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.71■□□□□ 0.91
VPS13CQ709C8 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS13CQ709C8 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS13CQ709C8 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS13CQ709C8 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS13CQ709C8 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.7■□□□□ 0.9
VPS13CQ709C8 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS13CQ709C8 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.7■□□□□ 0.9
VPS13CQ709C8 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS13CQ709C8 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS13CQ709C8 AC018755.3-202ENST00000596210 929 ntBASIC20.69■□□□□ 0.9
VPS13CQ709C8 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
VPS13CQ709C8 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13CQ709C8 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS13CQ709C8 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13CQ709C8 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13CQ709C8 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.69■□□□□ 0.9
VPS13CQ709C8 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS13CQ709C8 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13CQ709C8 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS13CQ709C8 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS13CQ709C8 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS13CQ709C8 AL359504.2-201ENST00000605506 1601 ntBASIC20.68■□□□□ 0.9
VPS13CQ709C8 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
VPS13CQ709C8 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS13CQ709C8 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS13CQ709C8 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS13CQ709C8 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS13CQ709C8 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS13CQ709C8 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS13CQ709C8 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms