Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CPSF4O95639 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CPSF4O95639 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CPSF4O95639 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CPSF4O95639 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CPSF4O95639 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.21■■□□□ 1.31
CPSF4O95639 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CPSF4O95639 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CPSF4O95639 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CPSF4O95639 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
CPSF4O95639 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.21■■□□□ 1.31
CPSF4O95639 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CPSF4O95639 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CPSF4O95639 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CPSF4O95639 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.2■■□□□ 1.3
CPSF4O95639 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CPSF4O95639 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CPSF4O95639 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.2■■□□□ 1.3
CPSF4O95639 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CPSF4O95639 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.2■■□□□ 1.3
CPSF4O95639 DUX4L11-201ENST00000611504 1267 ntBASIC23.2■■□□□ 1.3
CPSF4O95639 DUX4L12-201ENST00000614593 1267 ntBASIC23.2■■□□□ 1.3
CPSF4O95639 DUX4L14-201ENST00000621227 1267 ntBASIC23.2■■□□□ 1.3
CPSF4O95639 AC020928.2-201ENST00000588717 2197 ntBASIC23.2■■□□□ 1.3
CPSF4O95639 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CPSF4O95639 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.19■■□□□ 1.3
CPSF4O95639 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.19■■□□□ 1.3
CPSF4O95639 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CPSF4O95639 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CPSF4O95639 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.19■■□□□ 1.3
CPSF4O95639 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CPSF4O95639 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CPSF4O95639 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CPSF4O95639 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CPSF4O95639 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.18■■□□□ 1.3
CPSF4O95639 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
CPSF4O95639 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CPSF4O95639 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
CPSF4O95639 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
CPSF4O95639 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.17■■□□□ 1.3
CPSF4O95639 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CPSF4O95639 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CPSF4O95639 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.17■■□□□ 1.3
CPSF4O95639 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CPSF4O95639 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CPSF4O95639 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CPSF4O95639 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.17■■□□□ 1.3
CPSF4O95639 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4O95639 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4O95639 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4O95639 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4O95639 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4O95639 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.16■■□□□ 1.3
CPSF4O95639 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4O95639 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4O95639 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4O95639 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
CPSF4O95639 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.15■■□□□ 1.3
CPSF4O95639 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.15■■□□□ 1.3
CPSF4O95639 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.15■■□□□ 1.3
CPSF4O95639 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CPSF4O95639 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CPSF4O95639 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.15■■□□□ 1.3
CPSF4O95639 AC008813.1-201ENST00000536597 885 ntBASIC23.15■■□□□ 1.3
CPSF4O95639 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
CPSF4O95639 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CPSF4O95639 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CPSF4O95639 MIR219A2-201ENST00000608502 1504 ntBASIC23.14■■□□□ 1.3
CPSF4O95639 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CPSF4O95639 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CPSF4O95639 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.14■■□□□ 1.29
CPSF4O95639 ZNRF2P2-203ENST00000454624 420 ntBASIC23.14■■□□□ 1.29
CPSF4O95639 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
CPSF4O95639 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
CPSF4O95639 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CPSF4O95639 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CPSF4O95639 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
CPSF4O95639 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.12■■□□□ 1.29
CPSF4O95639 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
CPSF4O95639 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
CPSF4O95639 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CPSF4O95639 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.12■■□□□ 1.29
CPSF4O95639 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CPSF4O95639 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CPSF4O95639 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CPSF4O95639 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CPSF4O95639 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
CPSF4O95639 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CPSF4O95639 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
CPSF4O95639 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CPSF4O95639 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CPSF4O95639 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CPSF4O95639 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
CPSF4O95639 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.1■■□□□ 1.29
CPSF4O95639 ERN1-208ENST00000606895 2068 ntBASIC23.1■■□□□ 1.29
CPSF4O95639 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.09■■□□□ 1.29
CPSF4O95639 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
CPSF4O95639 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CPSF4O95639 HLA-V-202ENST00000446817 847 ntBASIC23.09■■□□□ 1.29
CPSF4O95639 AC148477.6-201ENST00000623746 465 ntBASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms