Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LMX1BO60663 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LMX1BO60663 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
LMX1BO60663 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1BO60663 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
LMX1BO60663 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1BO60663 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1BO60663 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.51■■□□□ 1.03
LMX1BO60663 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1BO60663 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1BO60663 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
LMX1BO60663 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LMX1BO60663 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LMX1BO60663 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.5■■□□□ 1.03
LMX1BO60663 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
LMX1BO60663 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LMX1BO60663 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LMX1BO60663 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LMX1BO60663 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LMX1BO60663 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LMX1BO60663 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
LMX1BO60663 AC145676.1-201ENST00000514988 2004 ntBASIC21.49■■□□□ 1.03
LMX1BO60663 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.49■■□□□ 1.03
LMX1BO60663 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.49■■□□□ 1.03
LMX1BO60663 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LMX1BO60663 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LMX1BO60663 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.48■■□□□ 1.03
LMX1BO60663 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.47■■□□□ 1.03
LMX1BO60663 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LMX1BO60663 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
LMX1BO60663 RNF126P1-201ENST00000567452 1320 ntBASIC21.47■■□□□ 1.03
LMX1BO60663 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LMX1BO60663 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.46■■□□□ 1.03
LMX1BO60663 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LMX1BO60663 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LMX1BO60663 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LMX1BO60663 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
LMX1BO60663 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LMX1BO60663 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
LMX1BO60663 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
LMX1BO60663 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
LMX1BO60663 AC092803.2-201ENST00000564287 1899 ntBASIC21.45■■□□□ 1.02
LMX1BO60663 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
LMX1BO60663 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LMX1BO60663 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LMX1BO60663 WHAMMP3-201ENST00000611636 1609 ntBASIC21.44■■□□□ 1.02
LMX1BO60663 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
LMX1BO60663 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
LMX1BO60663 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LMX1BO60663 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
LMX1BO60663 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LMX1BO60663 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
LMX1BO60663 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.42■■□□□ 1.02
LMX1BO60663 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LMX1BO60663 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.41■■□□□ 1.02
LMX1BO60663 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LMX1BO60663 AC020928.2-201ENST00000588717 2197 ntBASIC21.41■■□□□ 1.02
LMX1BO60663 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LMX1BO60663 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LMX1BO60663 AC142472.1-201ENST00000612013 1741 ntBASIC21.41■■□□□ 1.02
LMX1BO60663 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
LMX1BO60663 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
LMX1BO60663 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.41■■□□□ 1.02
LMX1BO60663 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
LMX1BO60663 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
LMX1BO60663 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LMX1BO60663 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1BO60663 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.4■■□□□ 1.02
LMX1BO60663 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1BO60663 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.4■■□□□ 1.02
LMX1BO60663 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.4■■□□□ 1.02
LMX1BO60663 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1BO60663 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1BO60663 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
LMX1BO60663 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1BO60663 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1BO60663 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
LMX1BO60663 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1BO60663 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1BO60663 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1BO60663 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
LMX1BO60663 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
LMX1BO60663 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.39■■□□□ 1.01
LMX1BO60663 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
LMX1BO60663 DUSP8P4-201ENST00000399538 1761 ntBASIC21.38■■□□□ 1.01
LMX1BO60663 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LMX1BO60663 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.38■■□□□ 1.01
LMX1BO60663 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LMX1BO60663 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LMX1BO60663 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LMX1BO60663 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
LMX1BO60663 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LMX1BO60663 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.37■■□□□ 1.01
LMX1BO60663 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LMX1BO60663 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.37■■□□□ 1.01
LMX1BO60663 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LMX1BO60663 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LMX1BO60663 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LMX1BO60663 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.36■■□□□ 1.01
LMX1BO60663 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms