Protein–RNA interactions for Protein: Q9Y2Q9

MRPS28, 28S ribosomal protein S28, mitochondrial, humanhuman

Known RBP Predictions only

Length 187 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28Q9Y2Q9 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRPS28Q9Y2Q9 WHAMMP3-201ENST00000611636 1609 ntBASIC21.17■□□□□ 0.98
MRPS28Q9Y2Q9 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRPS28Q9Y2Q9 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MRPS28Q9Y2Q9 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MRPS28Q9Y2Q9 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRPS28Q9Y2Q9 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.16■□□□□ 0.98
MRPS28Q9Y2Q9 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MRPS28Q9Y2Q9 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MRPS28Q9Y2Q9 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MRPS28Q9Y2Q9 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
MRPS28Q9Y2Q9 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.15■□□□□ 0.98
MRPS28Q9Y2Q9 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MRPS28Q9Y2Q9 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC21.15■□□□□ 0.98
MRPS28Q9Y2Q9 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
MRPS28Q9Y2Q9 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.15■□□□□ 0.98
MRPS28Q9Y2Q9 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.14■□□□□ 0.97
MRPS28Q9Y2Q9 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MRPS28Q9Y2Q9 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MRPS28Q9Y2Q9 AL162393.1-201ENST00000437852 946 ntBASIC21.14■□□□□ 0.97
MRPS28Q9Y2Q9 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
MRPS28Q9Y2Q9 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC21.14■□□□□ 0.97
MRPS28Q9Y2Q9 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MRPS28Q9Y2Q9 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
MRPS28Q9Y2Q9 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MRPS28Q9Y2Q9 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MRPS28Q9Y2Q9 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MRPS28Q9Y2Q9 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MRPS28Q9Y2Q9 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
MRPS28Q9Y2Q9 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
MRPS28Q9Y2Q9 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MRPS28Q9Y2Q9 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.12■□□□□ 0.97
MRPS28Q9Y2Q9 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MRPS28Q9Y2Q9 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MRPS28Q9Y2Q9 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MRPS28Q9Y2Q9 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MRPS28Q9Y2Q9 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MRPS28Q9Y2Q9 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MRPS28Q9Y2Q9 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
MRPS28Q9Y2Q9 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
MRPS28Q9Y2Q9 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MRPS28Q9Y2Q9 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MRPS28Q9Y2Q9 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MRPS28Q9Y2Q9 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.11■□□□□ 0.97
MRPS28Q9Y2Q9 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRPS28Q9Y2Q9 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRPS28Q9Y2Q9 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.1■□□□□ 0.97
MRPS28Q9Y2Q9 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MRPS28Q9Y2Q9 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRPS28Q9Y2Q9 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRPS28Q9Y2Q9 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MRPS28Q9Y2Q9 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MRPS28Q9Y2Q9 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MRPS28Q9Y2Q9 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MRPS28Q9Y2Q9 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MRPS28Q9Y2Q9 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.08■□□□□ 0.97
MRPS28Q9Y2Q9 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.08■□□□□ 0.97
MRPS28Q9Y2Q9 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
MRPS28Q9Y2Q9 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.08■□□□□ 0.97
MRPS28Q9Y2Q9 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.08■□□□□ 0.97
MRPS28Q9Y2Q9 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC21.08■□□□□ 0.97
MRPS28Q9Y2Q9 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
MRPS28Q9Y2Q9 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
MRPS28Q9Y2Q9 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
MRPS28Q9Y2Q9 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
MRPS28Q9Y2Q9 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.08■□□□□ 0.96
MRPS28Q9Y2Q9 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.07■□□□□ 0.96
MRPS28Q9Y2Q9 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
MRPS28Q9Y2Q9 AC021231.2-201ENST00000594613 730 ntBASIC21.07■□□□□ 0.96
MRPS28Q9Y2Q9 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MRPS28Q9Y2Q9 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MRPS28Q9Y2Q9 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MRPS28Q9Y2Q9 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MRPS28Q9Y2Q9 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MRPS28Q9Y2Q9 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
MRPS28Q9Y2Q9 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MRPS28Q9Y2Q9 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MRPS28Q9Y2Q9 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.05■□□□□ 0.96
MRPS28Q9Y2Q9 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MRPS28Q9Y2Q9 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
MRPS28Q9Y2Q9 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MRPS28Q9Y2Q9 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
MRPS28Q9Y2Q9 DUX4L29-201ENST00000425409 679 ntBASIC21.04■□□□□ 0.96
MRPS28Q9Y2Q9 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MRPS28Q9Y2Q9 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.04■□□□□ 0.96
MRPS28Q9Y2Q9 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
MRPS28Q9Y2Q9 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
MRPS28Q9Y2Q9 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MRPS28Q9Y2Q9 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MRPS28Q9Y2Q9 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
MRPS28Q9Y2Q9 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.03■□□□□ 0.96
MRPS28Q9Y2Q9 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.03■□□□□ 0.96
MRPS28Q9Y2Q9 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
MRPS28Q9Y2Q9 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MRPS28Q9Y2Q9 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MRPS28Q9Y2Q9 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
MRPS28Q9Y2Q9 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MRPS28Q9Y2Q9 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
MRPS28Q9Y2Q9 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MRPS28Q9Y2Q9 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms