Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SMC4Q9NTJ3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SMC4Q9NTJ3 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC31.84■■■□□ 2.69
SMC4Q9NTJ3 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SMC4Q9NTJ3 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC31.83■■■□□ 2.69
SMC4Q9NTJ3 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SMC4Q9NTJ3 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.69
SMC4Q9NTJ3 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC31.83■■■□□ 2.69
SMC4Q9NTJ3 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SMC4Q9NTJ3 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.69
SMC4Q9NTJ3 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC31.82■■■□□ 2.68
SMC4Q9NTJ3 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SMC4Q9NTJ3 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SMC4Q9NTJ3 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SMC4Q9NTJ3 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SMC4Q9NTJ3 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SMC4Q9NTJ3 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
SMC4Q9NTJ3 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
SMC4Q9NTJ3 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
SMC4Q9NTJ3 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SMC4Q9NTJ3 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SMC4Q9NTJ3 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC31.82■■■□□ 2.68
SMC4Q9NTJ3 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC31.81■■■□□ 2.68
SMC4Q9NTJ3 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC31.81■■■□□ 2.68
SMC4Q9NTJ3 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.68
SMC4Q9NTJ3 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SMC4Q9NTJ3 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC31.8■■■□□ 2.68
SMC4Q9NTJ3 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC31.79■■■□□ 2.68
SMC4Q9NTJ3 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SMC4Q9NTJ3 AL359258.2-201ENST00000564063 1566 ntBASIC31.79■■■□□ 2.68
SMC4Q9NTJ3 MIR4449-201ENST00000578365 66 ntBASIC31.79■■■□□ 2.68
SMC4Q9NTJ3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SMC4Q9NTJ3 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
SMC4Q9NTJ3 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
SMC4Q9NTJ3 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC31.78■■■□□ 2.68
SMC4Q9NTJ3 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC31.78■■■□□ 2.68
SMC4Q9NTJ3 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC31.77■■■□□ 2.68
SMC4Q9NTJ3 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
SMC4Q9NTJ3 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC31.77■■■□□ 2.68
SMC4Q9NTJ3 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC31.77■■■□□ 2.68
SMC4Q9NTJ3 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC31.77■■■□□ 2.68
SMC4Q9NTJ3 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
SMC4Q9NTJ3 AP004609.3-201ENST00000610705 1884 ntBASIC31.76■■■□□ 2.68
SMC4Q9NTJ3 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC31.76■■■□□ 2.67
SMC4Q9NTJ3 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
SMC4Q9NTJ3 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC31.76■■■□□ 2.67
SMC4Q9NTJ3 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
SMC4Q9NTJ3 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC31.76■■■□□ 2.67
SMC4Q9NTJ3 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
SMC4Q9NTJ3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
SMC4Q9NTJ3 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
SMC4Q9NTJ3 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
SMC4Q9NTJ3 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC31.73■■■□□ 2.67
SMC4Q9NTJ3 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
SMC4Q9NTJ3 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC31.73■■■□□ 2.67
SMC4Q9NTJ3 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
SMC4Q9NTJ3 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
SMC4Q9NTJ3 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
SMC4Q9NTJ3 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC31.72■■■□□ 2.67
SMC4Q9NTJ3 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
SMC4Q9NTJ3 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC31.72■■■□□ 2.67
SMC4Q9NTJ3 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SMC4Q9NTJ3 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SMC4Q9NTJ3 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC31.71■■■□□ 2.67
SMC4Q9NTJ3 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC31.7■■■□□ 2.67
SMC4Q9NTJ3 SRP68-213ENST00000629930 165 ntTSL 5 BASIC31.7■■■□□ 2.67
SMC4Q9NTJ3 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
SMC4Q9NTJ3 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
SMC4Q9NTJ3 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
SMC4Q9NTJ3 TPT1-202ENST00000379055 948 ntTSL 2 BASIC31.69■■■□□ 2.66
SMC4Q9NTJ3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
SMC4Q9NTJ3 AC142472.1-201ENST00000612013 1741 ntBASIC31.69■■■□□ 2.66
SMC4Q9NTJ3 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
SMC4Q9NTJ3 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
SMC4Q9NTJ3 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
SMC4Q9NTJ3 AC126177.7-201ENST00000547904 679 ntBASIC31.67■■■□□ 2.66
SMC4Q9NTJ3 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
SMC4Q9NTJ3 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
SMC4Q9NTJ3 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SMC4Q9NTJ3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
SMC4Q9NTJ3 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
SMC4Q9NTJ3 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SMC4Q9NTJ3 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
SMC4Q9NTJ3 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC31.65■■■□□ 2.66
SMC4Q9NTJ3 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SMC4Q9NTJ3 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC31.65■■■□□ 2.66
SMC4Q9NTJ3 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC31.64■■■□□ 2.66
SMC4Q9NTJ3 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
SMC4Q9NTJ3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
SMC4Q9NTJ3 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC31.64■■■□□ 2.66
SMC4Q9NTJ3 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
SMC4Q9NTJ3 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
SMC4Q9NTJ3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SMC4Q9NTJ3 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SMC4Q9NTJ3 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
SMC4Q9NTJ3 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC31.63■■■□□ 2.65
SMC4Q9NTJ3 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
SMC4Q9NTJ3 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
SMC4Q9NTJ3 AC060814.1-201ENST00000554326 538 ntBASIC31.62■■■□□ 2.65
SMC4Q9NTJ3 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms