Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC24.2■■□□□ 1.46
PTCHD3Q3KNS1 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC24.2■■□□□ 1.46
PTCHD3Q3KNS1 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.19■■□□□ 1.46
PTCHD3Q3KNS1 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.19■■□□□ 1.46
PTCHD3Q3KNS1 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
PTCHD3Q3KNS1 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC24.19■■□□□ 1.46
PTCHD3Q3KNS1 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
PTCHD3Q3KNS1 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
PTCHD3Q3KNS1 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
PTCHD3Q3KNS1 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PTCHD3Q3KNS1 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
PTCHD3Q3KNS1 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
PTCHD3Q3KNS1 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC24.18■■□□□ 1.46
PTCHD3Q3KNS1 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PTCHD3Q3KNS1 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
PTCHD3Q3KNS1 AL449106.1-201ENST00000608517 1980 ntBASIC24.18■■□□□ 1.46
PTCHD3Q3KNS1 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PTCHD3Q3KNS1 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
PTCHD3Q3KNS1 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
PTCHD3Q3KNS1 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC24.16■■□□□ 1.46
PTCHD3Q3KNS1 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC24.16■■□□□ 1.46
PTCHD3Q3KNS1 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
PTCHD3Q3KNS1 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PTCHD3Q3KNS1 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PTCHD3Q3KNS1 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC24.15■■□□□ 1.46
PTCHD3Q3KNS1 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
PTCHD3Q3KNS1 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.15■■□□□ 1.46
PTCHD3Q3KNS1 MIR219A2-201ENST00000608502 1504 ntBASIC24.15■■□□□ 1.46
PTCHD3Q3KNS1 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
PTCHD3Q3KNS1 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC24.14■■□□□ 1.45
PTCHD3Q3KNS1 AC148477.6-201ENST00000623746 465 ntBASIC24.14■■□□□ 1.45
PTCHD3Q3KNS1 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC24.14■■□□□ 1.45
PTCHD3Q3KNS1 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
PTCHD3Q3KNS1 WHAMMP3-201ENST00000611636 1609 ntBASIC24.13■■□□□ 1.45
PTCHD3Q3KNS1 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PTCHD3Q3KNS1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PTCHD3Q3KNS1 CHST11-203ENST00000547956 936 ntTSL 2 BASIC24.13■■□□□ 1.45
PTCHD3Q3KNS1 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC24.13■■□□□ 1.45
PTCHD3Q3KNS1 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
PTCHD3Q3KNS1 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC24.12■■□□□ 1.45
PTCHD3Q3KNS1 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
PTCHD3Q3KNS1 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC24.12■■□□□ 1.45
PTCHD3Q3KNS1 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PTCHD3Q3KNS1 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC24.12■■□□□ 1.45
PTCHD3Q3KNS1 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC24.12■■□□□ 1.45
PTCHD3Q3KNS1 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PTCHD3Q3KNS1 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
PTCHD3Q3KNS1 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
PTCHD3Q3KNS1 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.12■■□□□ 1.45
PTCHD3Q3KNS1 GPX1-201ENST00000419349 1106 ntBASIC24.11■■□□□ 1.45
PTCHD3Q3KNS1 CEP120-209ENST00000515110 606 ntTSL 3 BASIC24.11■■□□□ 1.45
PTCHD3Q3KNS1 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PTCHD3Q3KNS1 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
PTCHD3Q3KNS1 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC24.1■■□□□ 1.45
PTCHD3Q3KNS1 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCHD3Q3KNS1 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC24.1■■□□□ 1.45
PTCHD3Q3KNS1 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCHD3Q3KNS1 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PTCHD3Q3KNS1 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC24.09■■□□□ 1.45
PTCHD3Q3KNS1 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCHD3Q3KNS1 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PTCHD3Q3KNS1 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC24.09■■□□□ 1.45
PTCHD3Q3KNS1 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PTCHD3Q3KNS1 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PTCHD3Q3KNS1 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
PTCHD3Q3KNS1 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.08■■□□□ 1.45
PTCHD3Q3KNS1 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCHD3Q3KNS1 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC24.07■■□□□ 1.44
PTCHD3Q3KNS1 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC24.07■■□□□ 1.44
PTCHD3Q3KNS1 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PTCHD3Q3KNS1 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PTCHD3Q3KNS1 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PTCHD3Q3KNS1 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC24.06■■□□□ 1.44
PTCHD3Q3KNS1 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC24.06■■□□□ 1.44
PTCHD3Q3KNS1 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PTCHD3Q3KNS1 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PTCHD3Q3KNS1 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PTCHD3Q3KNS1 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
PTCHD3Q3KNS1 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC24.05■■□□□ 1.44
PTCHD3Q3KNS1 AP004609.3-201ENST00000610705 1884 ntBASIC24.05■■□□□ 1.44
PTCHD3Q3KNS1 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PTCHD3Q3KNS1 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
PTCHD3Q3KNS1 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC24.04■■□□□ 1.44
PTCHD3Q3KNS1 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PTCHD3Q3KNS1 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC24.04■■□□□ 1.44
PTCHD3Q3KNS1 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PTCHD3Q3KNS1 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC24.04■■□□□ 1.44
PTCHD3Q3KNS1 AC022413.1-201ENST00000624602 984 ntBASIC24.04■■□□□ 1.44
PTCHD3Q3KNS1 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC24.04■■□□□ 1.44
PTCHD3Q3KNS1 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC24.03■■□□□ 1.44
PTCHD3Q3KNS1 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
PTCHD3Q3KNS1 RARRES2P2-201ENST00000394842 485 ntBASIC24.03■■□□□ 1.44
PTCHD3Q3KNS1 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC24.03■■□□□ 1.44
PTCHD3Q3KNS1 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
PTCHD3Q3KNS1 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PTCHD3Q3KNS1 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24.03■■□□□ 1.44
PTCHD3Q3KNS1 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
PTCHD3Q3KNS1 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
PTCHD3Q3KNS1 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PTCHD3Q3KNS1 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 186.6 ms