Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
PCDH1Q08174 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PCDH1Q08174 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
PCDH1Q08174 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.42
PCDH1Q08174 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
PCDH1Q08174 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC23.89■■□□□ 1.41
PCDH1Q08174 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
PCDH1Q08174 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDH1Q08174 AC142472.1-201ENST00000612013 1741 ntBASIC23.88■■□□□ 1.41
PCDH1Q08174 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.88■■□□□ 1.41
PCDH1Q08174 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDH1Q08174 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDH1Q08174 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PCDH1Q08174 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
PCDH1Q08174 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDH1Q08174 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDH1Q08174 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.86■■□□□ 1.41
PCDH1Q08174 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.86■■□□□ 1.41
PCDH1Q08174 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.85■■□□□ 1.41
PCDH1Q08174 AP004609.3-201ENST00000610705 1884 ntBASIC23.85■■□□□ 1.41
PCDH1Q08174 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.85■■□□□ 1.41
PCDH1Q08174 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PCDH1Q08174 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDH1Q08174 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDH1Q08174 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.83■■□□□ 1.41
PCDH1Q08174 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.83■■□□□ 1.41
PCDH1Q08174 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
PCDH1Q08174 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.83■■□□□ 1.41
PCDH1Q08174 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCDH1Q08174 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.82■■□□□ 1.4
PCDH1Q08174 AC016575.1-201ENST00000607026 382 ntBASIC23.82■■□□□ 1.4
PCDH1Q08174 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDH1Q08174 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDH1Q08174 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDH1Q08174 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
PCDH1Q08174 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
PCDH1Q08174 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDH1Q08174 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.8■■□□□ 1.4
PCDH1Q08174 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.8■■□□□ 1.4
PCDH1Q08174 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PCDH1Q08174 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PCDH1Q08174 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.8■■□□□ 1.4
PCDH1Q08174 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PCDH1Q08174 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
PCDH1Q08174 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.8■■□□□ 1.4
PCDH1Q08174 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDH1Q08174 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDH1Q08174 MIR7108-201ENST00000614319 87 ntBASIC23.79■■□□□ 1.4
PCDH1Q08174 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDH1Q08174 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.79■■□□□ 1.4
PCDH1Q08174 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDH1Q08174 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDH1Q08174 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PCDH1Q08174 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.78■■□□□ 1.4
PCDH1Q08174 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.77■■□□□ 1.4
PCDH1Q08174 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PCDH1Q08174 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PCDH1Q08174 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PCDH1Q08174 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PCDH1Q08174 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
PCDH1Q08174 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDH1Q08174 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCDH1Q08174 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDH1Q08174 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.76■■□□□ 1.39
PCDH1Q08174 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
PCDH1Q08174 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDH1Q08174 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCDH1Q08174 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.76■■□□□ 1.39
PCDH1Q08174 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDH1Q08174 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.75■■□□□ 1.39
PCDH1Q08174 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDH1Q08174 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDH1Q08174 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.75■■□□□ 1.39
PCDH1Q08174 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.75■■□□□ 1.39
PCDH1Q08174 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.74■■□□□ 1.39
PCDH1Q08174 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PCDH1Q08174 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.74■■□□□ 1.39
PCDH1Q08174 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDH1Q08174 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.74■■□□□ 1.39
PCDH1Q08174 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDH1Q08174 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PCDH1Q08174 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDH1Q08174 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.72■■□□□ 1.39
PCDH1Q08174 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDH1Q08174 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.72■■□□□ 1.39
PCDH1Q08174 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.71■■□□□ 1.39
PCDH1Q08174 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
PCDH1Q08174 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.71■■□□□ 1.39
PCDH1Q08174 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDH1Q08174 AC091060.1-201ENST00000623524 1766 ntBASIC23.71■■□□□ 1.39
PCDH1Q08174 AL359258.2-201ENST00000564063 1566 ntBASIC23.71■■□□□ 1.39
PCDH1Q08174 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.71■■□□□ 1.39
PCDH1Q08174 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
PCDH1Q08174 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDH1Q08174 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
PCDH1Q08174 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
PCDH1Q08174 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
PCDH1Q08174 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDH1Q08174 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PCDH1Q08174 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.7■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms