Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC19.5■□□□□ 0.71
TRAV41A0A0B4J266 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
TRAV41A0A0B4J266 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
TRAV41A0A0B4J266 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV41A0A0B4J266 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
TRAV41A0A0B4J266 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV41A0A0B4J266 AC060814.1-201ENST00000554326 538 ntBASIC19.49■□□□□ 0.71
TRAV41A0A0B4J266 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV41A0A0B4J266 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
TRAV41A0A0B4J266 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC19.49■□□□□ 0.71
TRAV41A0A0B4J266 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
TRAV41A0A0B4J266 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV41A0A0B4J266 GPX1-201ENST00000419349 1106 ntBASIC19.48■□□□□ 0.71
TRAV41A0A0B4J266 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV41A0A0B4J266 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.48■□□□□ 0.71
TRAV41A0A0B4J266 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV41A0A0B4J266 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TRAV41A0A0B4J266 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV41A0A0B4J266 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
TRAV41A0A0B4J266 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV41A0A0B4J266 AL449106.1-201ENST00000608517 1980 ntBASIC19.46■□□□□ 0.71
TRAV41A0A0B4J266 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV41A0A0B4J266 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
TRAV41A0A0B4J266 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
TRAV41A0A0B4J266 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV41A0A0B4J266 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC19.46■□□□□ 0.71
TRAV41A0A0B4J266 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV41A0A0B4J266 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV41A0A0B4J266 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV41A0A0B4J266 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV41A0A0B4J266 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC19.45■□□□□ 0.7
TRAV41A0A0B4J266 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV41A0A0B4J266 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC19.45■□□□□ 0.7
TRAV41A0A0B4J266 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV41A0A0B4J266 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV41A0A0B4J266 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.44■□□□□ 0.7
TRAV41A0A0B4J266 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC19.44■□□□□ 0.7
TRAV41A0A0B4J266 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV41A0A0B4J266 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV41A0A0B4J266 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TRAV41A0A0B4J266 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
TRAV41A0A0B4J266 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TRAV41A0A0B4J266 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.43■□□□□ 0.7
TRAV41A0A0B4J266 HES4-202ENST00000428771 1040 ntTSL 2 BASIC19.43■□□□□ 0.7
TRAV41A0A0B4J266 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV41A0A0B4J266 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV41A0A0B4J266 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV41A0A0B4J266 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV41A0A0B4J266 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV41A0A0B4J266 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV41A0A0B4J266 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV41A0A0B4J266 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV41A0A0B4J266 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV41A0A0B4J266 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.41■□□□□ 0.7
TRAV41A0A0B4J266 HSD17B1P1-201ENST00000590052 955 ntBASIC19.41■□□□□ 0.7
TRAV41A0A0B4J266 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV41A0A0B4J266 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TRAV41A0A0B4J266 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV41A0A0B4J266 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV41A0A0B4J266 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRAV41A0A0B4J266 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC19.39■□□□□ 0.7
TRAV41A0A0B4J266 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
TRAV41A0A0B4J266 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
TRAV41A0A0B4J266 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC19.39■□□□□ 0.69
TRAV41A0A0B4J266 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC19.39■□□□□ 0.69
TRAV41A0A0B4J266 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV41A0A0B4J266 AC092296.2-201ENST00000589470 999 ntBASIC19.39■□□□□ 0.69
TRAV41A0A0B4J266 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV41A0A0B4J266 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
TRAV41A0A0B4J266 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV41A0A0B4J266 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
TRAV41A0A0B4J266 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV41A0A0B4J266 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV41A0A0B4J266 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV41A0A0B4J266 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV41A0A0B4J266 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
TRAV41A0A0B4J266 AL157400.5-201ENST00000507624 621 ntBASIC19.37■□□□□ 0.69
TRAV41A0A0B4J266 MOB2-207ENST00000614710 705 ntTSL 5 BASIC19.37■□□□□ 0.69
TRAV41A0A0B4J266 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
TRAV41A0A0B4J266 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.37■□□□□ 0.69
TRAV41A0A0B4J266 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV41A0A0B4J266 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV41A0A0B4J266 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
TRAV41A0A0B4J266 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV41A0A0B4J266 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV41A0A0B4J266 ECEL1P2-201ENST00000461596 1295 ntBASIC19.36■□□□□ 0.69
TRAV41A0A0B4J266 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAV41A0A0B4J266 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV41A0A0B4J266 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV41A0A0B4J266 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV41A0A0B4J266 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV41A0A0B4J266 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
TRAV41A0A0B4J266 RNF126P1-201ENST00000567452 1320 ntBASIC19.35■□□□□ 0.69
TRAV41A0A0B4J266 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV41A0A0B4J266 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV41A0A0B4J266 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC19.35■□□□□ 0.69
TRAV41A0A0B4J266 AP004609.3-201ENST00000610705 1884 ntBASIC19.35■□□□□ 0.69
TRAV41A0A0B4J266 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.34■□□□□ 0.69
TRAV41A0A0B4J266 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC19.34■□□□□ 0.69
TRAV41A0A0B4J266 AL359504.2-201ENST00000605506 1601 ntBASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms