Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 HMBS-212ENST00000542044 1544 ntTSL 515.34■□□□□ 0.055e-8■□□□□ 8.7
SUB1P53999 HMBS-215ENST00000542822 936 ntTSL 515.12■□□□□ 0.015e-8■□□□□ 8.7
SUB1P53999 ACTB-212ENST00000484841 1032 ntTSL 514.95□□□□□ -0.024e-15■□□□□ 8.7
SUB1P53999 HMBS-208ENST00000536813 507 ntTSL 312.29□□□□□ -0.445e-8■□□□□ 8.7
SUB1P53999 HMBS-207ENST00000536185 441 ntTSL 312.16□□□□□ -0.465e-8■□□□□ 8.7
SUB1P53999 HMBS-222ENST00000545621 1282 ntTSL 1 (best)12.16□□□□□ -0.465e-8■□□□□ 8.7
SUB1P53999 HMBS-225ENST00000546302 707 ntTSL 512.16□□□□□ -0.465e-8■□□□□ 8.7
SUB1P53999 ACTB-206ENST00000443528 569 ntTSL 411.92□□□□□ -0.54e-15■□□□□ 8.7
SUB1P53999 ACTB-205ENST00000432588 568 ntTSL 411.91□□□□□ -0.54e-15■□□□□ 8.7
SUB1P53999 ACTB-202ENST00000414620 561 ntTSL 411.45□□□□□ -0.584e-15■□□□□ 8.7
SUB1P53999 HMBS-205ENST00000535253 755 ntTSL 49.81□□□□□ -0.845e-8■□□□□ 8.7
SUB1P53999 HMBS-211ENST00000539986 1155 ntTSL 39.81□□□□□ -0.845e-8■□□□□ 8.7
SUB1P53999 HMBS-220ENST00000544360 695 ntTSL 39.81□□□□□ -0.845e-8■□□□□ 8.7
SUB1P53999 HMBS-218ENST00000543821 562 ntTSL 49.45□□□□□ -0.95e-8■□□□□ 8.7
SUB1P53999 ACTB-209ENST00000473257 556 ntTSL 38.02□□□□□ -1.134e-15■□□□□ 8.7
SUB1P53999 HMBS-206ENST00000535793 832 ntTSL 57.07□□□□□ -1.285e-8■□□□□ 8.7
SUB1P53999 HMBS-213ENST00000542345 882 ntTSL 35.14□□□□□ -1.595e-8■□□□□ 8.7
SUB1P53999 HMBS-204ENST00000534956 547 ntTSL 54.57□□□□□ -1.685e-8■□□□□ 8.7
SUB1P53999 NAT10-208ENST00000532555 615 ntTSL 22.66□□□□□ -1.985e-8■□□□□ 8.7
SUB1P53999 FLNA-211ENST00000465144 398 ntTSL 214.17□□□□□ -0.141e-7■□□□□ 8.7
SUB1P53999 UFD1-204ENST00000447868 596 ntTSL 318.92■□□□□ 0.625e-8■□□□□ 8.7
SUB1P53999 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.465e-8■□□□□ 8.7
SUB1P53999 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.035e-8■□□□□ 8.7
SUB1P53999 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.165e-8■□□□□ 8.7
SUB1P53999 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.365e-8■□□□□ 8.7
SUB1P53999 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC12.78□□□□□ -0.365e-8■□□□□ 8.7
SUB1P53999 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC12.6□□□□□ -0.395e-8■□□□□ 8.7
SUB1P53999 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.445e-8■□□□□ 8.7
SUB1P53999 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.3□□□□□ -0.445e-8■□□□□ 8.7
SUB1P53999 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.455e-8■□□□□ 8.7
SUB1P53999 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC11.34□□□□□ -0.595e-8■□□□□ 8.7
SUB1P53999 UFD1-209ENST00000489406 994 ntTSL 29.94□□□□□ -0.825e-8■□□□□ 8.7
SUB1P53999 HIST1H3H-201ENST00000369163 1237 ntAPPRIS P1 BASIC9.87□□□□□ -0.835e-8■□□□□ 8.7
SUB1P53999 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC9.81□□□□□ -0.845e-8■□□□□ 8.7
SUB1P53999 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.875e-8■□□□□ 8.7
SUB1P53999 UFD1-205ENST00000459854 5038 ntTSL 1 (best)8.88□□□□□ -0.995e-8■□□□□ 8.7
SUB1P53999 UFD1-208ENST00000484101 751 ntTSL 57.83□□□□□ -1.165e-8■□□□□ 8.7
SUB1P53999 UFD1-203ENST00000421968 670 ntTSL 37.76□□□□□ -1.175e-8■□□□□ 8.7
SUB1P53999 UFD1-210ENST00000494054 588 ntTSL 57.2□□□□□ -1.265e-8■□□□□ 8.7
SUB1P53999 MCM4-212ENST00000521151 1125 ntTSL 26.27□□□□□ -1.411e-11■□□□□ 8.7
SUB1P53999 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC4.1□□□□□ -1.754e-15■□□□□ 8.7
SUB1P53999 UFD1-207ENST00000474226 293 ntTSL 53.47□□□□□ -1.855e-8■□□□□ 8.7
SUB1P53999 ATP5H-203ENST00000538432 533 ntTSL 31.9□□□□□ -2.115e-8■□□□□ 8.7
SUB1P53999 TOMM7-205ENST00000483581 551 ntTSL 1 (best)1.19□□□□□ -2.224e-15■□□□□ 8.7
SUB1P53999 ALDOA-220ENST00000566846 512 ntTSL 29.21□□□□□ -0.944e-30■□□□□ 8.6
SUB1P53999 ALDOA-205ENST00000562168 666 ntTSL 38.52□□□□□ -1.054e-30■□□□□ 8.6
SUB1P53999 ALDOA-210ENST00000563987 586 ntTSL 28.03□□□□□ -1.124e-30■□□□□ 8.6
SUB1P53999 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.213e-10■□□□□ 8.6
SUB1P53999 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC13.44□□□□□ -0.263e-10■□□□□ 8.6
SUB1P53999 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC12.4□□□□□ -0.423e-10■□□□□ 8.6
SUB1P53999 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.23■□□□□ 0.991e-6■□□□□ 8.5
SUB1P53999 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.71e-6■□□□□ 8.5
SUB1P53999 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC19.08■□□□□ 0.641e-6■□□□□ 8.5
SUB1P53999 UBXN6-203ENST00000587009 1967 ntTSL 216.58■□□□□ 0.251e-6■□□□□ 8.5
SUB1P53999 SSBP4-203ENST00000593641 900 ntTSL 516.55■□□□□ 0.241e-6■□□□□ 8.5
SUB1P53999 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.151e-6■□□□□ 8.5
SUB1P53999 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.061e-6■□□□□ 8.5
SUB1P53999 SSBP4-210ENST00000601444 427 ntTSL 515.26■□□□□ 0.031e-6■□□□□ 8.5
SUB1P53999 UBXN6-206ENST00000590466 803 ntTSL 315.23■□□□□ 0.031e-6■□□□□ 8.5
SUB1P53999 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.88□□□□□ -0.031e-6■□□□□ 8.5
SUB1P53999 SSBP4-212ENST00000601919 492 ntTSL 514.73□□□□□ -0.051e-6■□□□□ 8.5
SUB1P53999 UBXN6-207ENST00000591919 1613 ntTSL 514.71□□□□□ -0.051e-6■□□□□ 8.5
SUB1P53999 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.151e-6■□□□□ 8.5
SUB1P53999 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC13.97□□□□□ -0.171e-6■□□□□ 8.5
SUB1P53999 UBXN6-204ENST00000587324 712 ntTSL 313.89□□□□□ -0.191e-6■□□□□ 8.5
SUB1P53999 UBXN6-205ENST00000588238 4598 nt13.13□□□□□ -0.311e-6■□□□□ 8.5
SUB1P53999 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.321e-6■□□□□ 8.5
SUB1P53999 SSBP4-207ENST00000600244 622 ntTSL 212.59□□□□□ -0.391e-6■□□□□ 8.5
SUB1P53999 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.41e-6■□□□□ 8.5
SUB1P53999 TLN1-206ENST00000486788 551 ntTSL 512.47□□□□□ -0.411e-6■□□□□ 8.5
SUB1P53999 NOP58-210ENST00000492740 793 ntTSL 212□□□□□ -0.491e-6■□□□□ 8.5
SUB1P53999 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.571e-6■□□□□ 8.5
SUB1P53999 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.581e-6■□□□□ 8.5
SUB1P53999 NOP58-208ENST00000488403 871 ntTSL 211.27□□□□□ -0.611e-6■□□□□ 8.5
SUB1P53999 UNC13D-215ENST00000591563 4382 ntTSL 210.99□□□□□ -0.651e-6■□□□□ 8.5
SUB1P53999 UNC13D-207ENST00000586930 211 ntTSL 310.82□□□□□ -0.681e-6■□□□□ 8.5
SUB1P53999 NOP58-202ENST00000426814 655 ntTSL 210.6□□□□□ -0.711e-6■□□□□ 8.5
SUB1P53999 UNC13D-202ENST00000412096 3648 ntTSL 2 BASIC10.17□□□□□ -0.781e-6■□□□□ 8.5
SUB1P53999 TMED9-206ENST00000513799 772 ntTSL 29.21□□□□□ -0.941e-6■□□□□ 8.5
SUB1P53999 NOP58-204ENST00000467734 638 ntTSL 58.54□□□□□ -1.041e-6■□□□□ 8.5
SUB1P53999 NOP58-205ENST00000472050 582 ntTSL 38.18□□□□□ -1.11e-6■□□□□ 8.5
SUB1P53999 PHF19-207ENST00000456291 888 ntTSL 317.15■□□□□ 0.341e-6■□□□□ 8.5
SUB1P53999 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.161e-6■□□□□ 8.5
SUB1P53999 AP2M1-211ENST00000460862 551 ntTSL 415□□□□□ -0.012e-12■□□□□ 8.5
SUB1P53999 AP2M1-204ENST00000427072 557 ntTSL 414.66□□□□□ -0.062e-12■□□□□ 8.5
SUB1P53999 AP2M1-214ENST00000466598 684 ntTSL 214.66□□□□□ -0.062e-12■□□□□ 8.5
SUB1P53999 KMT2D-202ENST00000526209 859 ntTSL 314.57□□□□□ -0.081e-6■□□□□ 8.5
SUB1P53999 AP2M1-220ENST00000487958 796 ntTSL 213.72□□□□□ -0.212e-12■□□□□ 8.5
SUB1P53999 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.211e-6■□□□□ 8.5
SUB1P53999 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC13.59□□□□□ -0.231e-6■□□□□ 8.5
SUB1P53999 POLD1-211ENST00000600746 999 ntTSL 513.35□□□□□ -0.271e-6■□□□□ 8.5
SUB1P53999 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC13.27□□□□□ -0.281e-6■□□□□ 8.5
SUB1P53999 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.411e-6■□□□□ 8.5
SUB1P53999 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC12.08□□□□□ -0.481e-6■□□□□ 8.5
SUB1P53999 POLD1-213ENST00000601098 783 ntTSL 311.92□□□□□ -0.51e-6■□□□□ 8.5
SUB1P53999 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.511e-6■□□□□ 8.5
SUB1P53999 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.511e-6■□□□□ 8.5
SUB1P53999 EIF3D-207ENST00000457241 729 ntTSL 211.82□□□□□ -0.521e-6■□□□□ 8.5
SUB1P53999 ETFB-203ENST00000593992 603 ntTSL 211.73□□□□□ -0.531e-6■□□□□ 8.5
SUB1P53999 ETFB-205ENST00000596253 575 ntTSL 311.4□□□□□ -0.581e-6■□□□□ 8.5
Retrieved 100 of 11,644 protein–RNA pairs in 243.2 ms