Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.211e-323■■■■□ 24.1
SUB1P53999 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC13.53□□□□□ -0.241e-323■■■■■ 85.9
SUB1P53999 HDDC2-201ENST00000318787 1350 ntTSL 1 (best)12.1□□□□□ -0.471e-323■■■■■ 87.7
SUB1P53999 RPS18-236ENST00000490191 996 ntTSL 211.26□□□□□ -0.611e-323■■■□□ 18
SUB1P53999 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.661e-323■■■■■ 87.7
SUB1P53999 HDDC2-209ENST00000609477 564 ntTSL 410.93□□□□□ -0.661e-323■■■■■ 87.7
SUB1P53999 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC10.91□□□□□ -0.661e-323■■■■■ 106.8
SUB1P53999 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC10.87□□□□□ -0.671e-323■■■■■ 87.7
SUB1P53999 EEF2-201ENST00000309311 3164 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.911e-323■■■■□ 24
SUB1P53999 UQCRH-203ENST00000486951 687 ntTSL 39.31□□□□□ -0.921e-323■■■■■ 56.4
SUB1P53999 SND1-212ENST00000485871 597 ntTSL 38.86□□□□□ -0.991e-323■■■■■ 31.9
SUB1P53999 RPS18-235ENST00000479802 413 ntTSL 28.71□□□□□ -1.021e-323■■■□□ 18
SUB1P53999 RPS18-234ENST00000476222 685 ntTSL 1 (best)8.71□□□□□ -1.021e-323■■■□□ 18
SUB1P53999 RPS18-230ENST00000439602 613 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.021e-323■■■□□ 18
SUB1P53999 RPS18-233ENST00000474973 589 ntTSL 2 BASIC8.71□□□□□ -1.021e-323■■■□□ 18
SUB1P53999 RPS18-231ENST00000472218 1109 ntTSL 28.64□□□□□ -1.031e-323■■■□□ 18
SUB1P53999 HSP90AB1-202ENST00000371554 2674 ntAPPRIS P1 TSL 5 BASIC8.01□□□□□ -1.131e-323■■■■■ 136.8
SUB1P53999 RPS18-237ENST00000496813 642 ntTSL 27.94□□□□□ -1.141e-323■■■□□ 18
SUB1P53999 RPS18-232ENST00000474626 639 ntTSL 37.94□□□□□ -1.141e-323■■■□□ 18
SUB1P53999 HSP90AB1-203ENST00000371646 2572 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.151e-323■■■■■ 136.8
SUB1P53999 HIST1H4D-201ENST00000614247 312 ntAPPRIS P1 BASIC7.83□□□□□ -1.161e-323■■■■■ 86.8
SUB1P53999 HSP90AB1-201ENST00000353801 2582 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.231e-323■■■■■ 136.8
SUB1P53999 HSP90AB1-204ENST00000620073 2644 ntAPPRIS P1 TSL 5 BASIC6.93□□□□□ -1.31e-323■■■■■ 136.8
SUB1P53999 EEF2-207ENST00000600794 352 ntTSL 36.79□□□□□ -1.321e-323■■■■□ 24
SUB1P53999 NPM1-208ENST00000521672 597 ntTSL 56.45□□□□□ -1.381e-323■■■□□ 18
SUB1P53999 HIST1H4E-201ENST00000615164 1487 ntAPPRIS P1 BASIC5.96□□□□□ -1.451e-323■■■■■ 149.4
SUB1P53999 NPM1-211ENST00000523622 247 ntTSL 35.26□□□□□ -1.571e-323■■■□□ 18
SUB1P53999 HDDC2-205ENST00000608456 624 ntTSL 35.26□□□□□ -1.571e-323■■■■■ 87.7
SUB1P53999 NPM1-205ENST00000518587 670 ntTSL 24.63□□□□□ -1.671e-323■■■□□ 18
SUB1P53999 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC4.43□□□□□ -1.71e-323■■■□□ 18
SUB1P53999 RPL14-207ENST00000465325 788 ntTSL 34.24□□□□□ -1.731e-323■■□□□ 14.5
SUB1P53999 HDDC2-208ENST00000609021 3529 nt3.73□□□□□ -1.811e-323■■■■■ 87.7
SUB1P53999 RPS12-202ENST00000484616 639 ntTSL 22.61□□□□□ -1.991e-323■■■■□ 24.1
SUB1P53999 NPM1-210ENST00000523339 268 ntTSL 22.55□□□□□ -21e-323■■■□□ 18
SUB1P53999 HIST1H2AC-201ENST00000314088 1668 ntTSL 1 (best)14.09□□□□□ -0.158e-118■■■■■ 192.3
SUB1P53999 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.348e-118■■■■■ 192.3
SUB1P53999 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.528e-118■■■■■ 185.1
SUB1P53999 CBX3-206ENST00000481057 860 ntTSL 24.03□□□□□ -1.762e-102■■■■■ 192.9
SUB1P53999 COX6C-211ENST00000606245 646 nt8.79□□□□□ -11e-95■■■■■ 153.4
SUB1P53999 RPL17-210ENST00000581091 573 ntTSL 29.07□□□□□ -0.961e-88■■■■■ 41.2
SUB1P53999 RPL17-216ENST00000582935 469 ntTSL 29.07□□□□□ -0.961e-88■■■■■ 41.2
SUB1P53999 RPL17-C18orf32-202ENST00000577910 1012 ntTSL 55.98□□□□□ -1.451e-88■■■■■ 41.2
SUB1P53999 RPL17-213ENST00000581741 596 ntTSL 25.83□□□□□ -1.481e-88■■■■■ 41.2
SUB1P53999 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC4.76□□□□□ -1.651e-88■■■■■ 41.2
SUB1P53999 RPL17-219ENST00000584364 523 ntTSL 23.61□□□□□ -1.831e-88■■■■■ 41.2
SUB1P53999 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC9.39□□□□□ -0.912e-84■■■■■ 122.9
SUB1P53999 CCT5-210ENST00000511995 1091 ntTSL 27.18□□□□□ -1.267e-80■■■■■ 120.3
SUB1P53999 RPL14-204ENST00000435633 966 ntTSL 215.8■□□□□ 0.122e-78■■□□□ 13.4
SUB1P53999 RPL14-206ENST00000465280 616 ntTSL 212.44□□□□□ -0.422e-78■■□□□ 13.4
SUB1P53999 RPL14-209ENST00000481798 604 ntTSL 35.24□□□□□ -1.572e-78■■□□□ 13.4
SUB1P53999 RPL14-205ENST00000461368 170 ntTSL 21.11□□□□□ -2.233e-78■■□□□ 12.7
SUB1P53999 NONO-203ENST00000373856 1921 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.794e-77■■■■■ 64.7
SUB1P53999 NONO-211ENST00000473525 1430 ntTSL 58.57□□□□□ -1.044e-77■■■■■ 64.7
SUB1P53999 NONO-212ENST00000474431 644 ntTSL 55.69□□□□□ -1.54e-77■■■■■ 64.7
SUB1P53999 NONO-210ENST00000472185 397 ntTSL 54.61□□□□□ -1.674e-77■■■■■ 64.7
SUB1P53999 EEF1A1-205ENST00000455918 701 ntTSL 214.11□□□□□ -0.152e-75■□□□□ 10.9
SUB1P53999 EEF1A1-204ENST00000356303 635 ntTSL 26.5□□□□□ -1.372e-75■□□□□ 10.9
SUB1P53999 RPL11-203ENST00000458455 721 ntTSL 1 (best)9.07□□□□□ -0.969e-74■■□□□ 13.5
SUB1P53999 RPL11-201ENST00000374550 634 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.249e-74■■□□□ 13.5
SUB1P53999 RPL11-205ENST00000482370 879 ntTSL 1 (best)6.7□□□□□ -1.349e-74■■□□□ 13.5
SUB1P53999 RPL11-202ENST00000443624 994 ntTSL 26.22□□□□□ -1.419e-74■■□□□ 13.5
SUB1P53999 RPL11-204ENST00000467075 377 ntTSL 310.32□□□□□ -0.765e-73■□□□□ 9.3
SUB1P53999 HNRNPH1-240ENST00000521720 539 ntTSL 312.65□□□□□ -0.385e-73■■■■□ 22
SUB1P53999 HNRNPH1-205ENST00000502632 1509 ntTSL 212.2□□□□□ -0.465e-73■■■■□ 22
SUB1P53999 HNRNPA1-212ENST00000551679 359 ntTSL 24.22□□□□□ -1.732e-72■■■□□ 19.1
SUB1P53999 PRAME-203ENST00000402697 2057 ntAPPRIS P2 TSL 5 BASIC10.62□□□□□ -0.716e-69■■□□□ 13.2
SUB1P53999 RPL4-207ENST00000564647 1110 ntTSL 24.59□□□□□ -1.671e-61■■■■■ 31.6
SUB1P53999 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC9.89□□□□□ -0.833e-61■■■■■ 137.5
SUB1P53999 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.317e-61■■■■■ 73.9
SUB1P53999 GPI-208ENST00000588991 2021 ntTSL 216.53■□□□□ 0.247e-61■■■■■ 73.9
SUB1P53999 GPI-204ENST00000586392 1706 ntTSL 212.1□□□□□ -0.477e-61■■■■■ 73.9
SUB1P53999 GPI-203ENST00000586077 3053 nt8.4□□□□□ -1.067e-61■■■■■ 73.9
SUB1P53999 GPI-205ENST00000586425 1799 ntTSL 5 BASIC12.48□□□□□ -0.419e-61■■■■■ 61.6
SUB1P53999 RPL24-203ENST00000469605 799 ntTSL 2 BASIC7.99□□□□□ -1.134e-59■■■■□ 20.5
SUB1P53999 HMGN1-206ENST00000431390 1552 ntTSL 314.43□□□□□ -0.15e-59■■■■■ 41.6
SUB1P53999 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.385e-59■■■■■ 41.6
SUB1P53999 HMGN1-216ENST00000486741 4299 ntTSL 211.16□□□□□ -0.625e-59■■■■■ 41.6
SUB1P53999 HMGN1-220ENST00000492280 2707 ntTSL 59.92□□□□□ -0.825e-59■■■■■ 41.6
SUB1P53999 HMGN1-201ENST00000288344 1303 ntTSL 26.85□□□□□ -1.315e-59■■■■■ 41.6
SUB1P53999 RPL24-204ENST00000470961 572 ntTSL 27.45□□□□□ -1.225e-59■■■■□ 20
SUB1P53999 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC5.15□□□□□ -1.594e-58■■□□□ 14.2
SUB1P53999 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC14.17□□□□□ -0.142e-57■■■■■ 200.7
SUB1P53999 CKS1B-206ENST00000474215 739 ntTSL 38.4□□□□□ -1.062e-57■■■■■ 200.7
SUB1P53999 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.792e-57■■■■■ 200.7
SUB1P53999 CKS1B-207ENST00000477676 602 ntTSL 33.13□□□□□ -1.914e-57■■■■■ 205.6
SUB1P53999 ATIC-206ENST00000442048 442 ntTSL 35.33□□□□□ -1.566e-56■■■■■ 86.6
SUB1P53999 ATIC-212ENST00000478734 486 ntTSL 24.2□□□□□ -1.746e-56■■■■■ 86.6
SUB1P53999 ATIC-213ENST00000479093 772 ntTSL 24.03□□□□□ -1.766e-56■■■■■ 86.6
SUB1P53999 RACK1-203ENST00000502844 1460 ntTSL 312.13□□□□□ -0.472e-55■□□□□ 10
SUB1P53999 RACK1-207ENST00000503170 461 ntTSL 411.98□□□□□ -0.492e-55■□□□□ 10
SUB1P53999 RACK1-230ENST00000513060 1651 ntTSL 510.71□□□□□ -0.692e-55■□□□□ 10
SUB1P53999 RACK1-229ENST00000513027 697 ntTSL 310.03□□□□□ -0.82e-55■□□□□ 10
SUB1P53999 RACK1-202ENST00000502548 1090 ntTSL 1 (best)9.85□□□□□ -0.832e-55■□□□□ 10
SUB1P53999 RACK1-223ENST00000510199 1100 ntTSL 39.38□□□□□ -0.912e-55■□□□□ 10
SUB1P53999 RACK1-226ENST00000511900 922 ntTSL 5 BASIC8.81□□□□□ -12e-55■□□□□ 10
SUB1P53999 RACK1-227ENST00000512805 1403 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.132e-55■□□□□ 10
SUB1P53999 RACK1-205ENST00000502905 643 ntTSL 37.96□□□□□ -1.142e-55■□□□□ 10
SUB1P53999 RACK1-212ENST00000505461 1005 ntTSL 57.78□□□□□ -1.162e-55■□□□□ 10
SUB1P53999 RACK1-234ENST00000515417 873 ntTSL 37.35□□□□□ -1.232e-55■□□□□ 10
SUB1P53999 RACK1-210ENST00000504325 1098 ntTSL 1 (best)7.27□□□□□ -1.252e-55■□□□□ 10
Retrieved 100 of 11,644 protein–RNA pairs in 44 ms