RNA–Protein interactions for RNA: ENST00000600244.5

SSBP4-207, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 622 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-207ENST00000600244 NISCHQ9Y2I1 1504 aa45.76■■■■■ 4.92
SSBP4-207ENST00000600244 ABCC9O60706 1549 aa42.57■■■■■ 4.41
SSBP4-207ENST00000600244 CCDC180Q9P1Z9 1646 aa41.46■■■■■ 4.23
SSBP4-207ENST00000600244 DNAJC5BQ9UF47 199 aa41.06■■■■■ 4.16
SSBP4-207ENST00000600244 RB1CC1Q8TDY2 1594 aa40.01■■■■■ 4
SSBP4-207ENST00000600244 NACADO15069 1562 aa39.51■■■■□ 3.92
SSBP4-207ENST00000600244 PABPN1Q86U42 306 aaKnown RBP eCLIP39.51■■■■□ 3.922e-7■■■□□ 17.7
SSBP4-207ENST00000600244 UNC13AQ9UPW8 1703 aa39.07■■■■□ 3.85
SSBP4-207ENST00000600244 DCAF8L2P0C7V8 631 aa39.05■■■■□ 3.84
SSBP4-207ENST00000600244 BICRAQ9NZM4 1560 aa38.96■■■■□ 3.83
SSBP4-207ENST00000600244 MYO15BQ96JP2 1530 aa38.65■■■■□ 3.78
SSBP4-207ENST00000600244 DNAJC5Q9H3Z4 198 aa38.5■■■■□ 3.75
SSBP4-207ENST00000600244 CECR2Q9BXF3 1484 aa38.48■■■■□ 3.75
SSBP4-207ENST00000600244 CC2D2AQ9P2K1 1620 aa38.39■■■■□ 3.74
SSBP4-207ENST00000600244 SHROOM4Q9ULL8 1493 aa38.29■■■■□ 3.72
SSBP4-207ENST00000600244 EIF4G1Q04637 1599 aaKnown RBP38.05■■■■□ 3.68
SSBP4-207ENST00000600244 DCAF1Q9Y4B6 1507 aa37.74■■■■□ 3.63
SSBP4-207ENST00000600244 SCRIBQ14160 1630 aa37.68■■■■□ 3.62
SSBP4-207ENST00000600244 ZCCHC6Q5VYS8 1495 aaKnown RBP37.66■■■■□ 3.62
SSBP4-207ENST00000600244 CUX2O14529 1486 aa37.16■■■■□ 3.54
SSBP4-207ENST00000600244 ERCC6Q03468 1493 aa36.79■■■■□ 3.48
SSBP4-207ENST00000600244 NCAPD3P42695 1498 aa36.56■■■■□ 3.44
SSBP4-207ENST00000600244 NESP48681 1621 aa36.28■■■■□ 3.4
SSBP4-207ENST00000600244 ATAD2BQ9ULI0 1458 aa36.25■■■■□ 3.39
SSBP4-207ENST00000600244 TRIM41Q8WV44 630 aa36.23■■■■□ 3.39
SSBP4-207ENST00000600244 HMGXB3Q12766 1538 aa36.1■■■■□ 3.37
SSBP4-207ENST00000600244 THOC2Q8NI27 1593 aaKnown RBP36.1■■■■□ 3.37
SSBP4-207ENST00000600244 SMARCA2P51531 1590 aa36.03■■■■□ 3.36
SSBP4-207ENST00000600244 SMARCA4P51532 1647 aa35.87■■■■□ 3.33
SSBP4-207ENST00000600244 LAMC3Q9Y6N6 1575 aa35.82■■■■□ 3.32
SSBP4-207ENST00000600244 BAZ1BQ9UIG0 1483 aaKnown RBP35.78■■■■□ 3.32
SSBP4-207ENST00000600244 KIF21AQ7Z4S6 1674 aa35.69■■■■□ 3.3
SSBP4-207ENST00000600244 PDS5BQ9NTI5 1447 aa35.67■■■■□ 3.3
SSBP4-207ENST00000600244 PEG3Q9GZU2 1588 aa35.59■■■■□ 3.29
SSBP4-207ENST00000600244 BAZ1AQ9NRL2 1556 aaPredicted RBP35.54■■■■□ 3.28
SSBP4-207ENST00000600244 MRC2Q9UBG0 1479 aa35.42■■■■□ 3.26
SSBP4-207ENST00000600244 CADPSQ9ULU8 1353 aa35.38■■■■□ 3.25
SSBP4-207ENST00000600244 WDR62O43379 1518 aa35.37■■■■□ 3.25
SSBP4-207ENST00000600244 OSCARQ8IYS5 282 aa35.33■■■■□ 3.25
SSBP4-207ENST00000600244 MROH2BQ7Z745 1585 aa35.24■■■■□ 3.23
SSBP4-207ENST00000600244 CEP164Q9UPV0 1460 aa35.03■■■■□ 3.2
SSBP4-207ENST00000600244 FANCD2Q9BXW9 1451 aa34.92■■■■□ 3.18
SSBP4-207ENST00000600244 RIMBP3CA6NJZ7 1639 aa34.91■■■■□ 3.18
SSBP4-207ENST00000600244 RIMBP3BA6NNM3 1639 aa34.91■■■■□ 3.18
SSBP4-207ENST00000600244 RIMBP3Q9UFD9 1639 aa34.91■■■■□ 3.18
SSBP4-207ENST00000600244 CFTRP13569 1480 aa34.73■■■■□ 3.15
SSBP4-207ENST00000600244 URB2Q14146 1524 aaKnown RBP34.73■■■■□ 3.15
SSBP4-207ENST00000600244 WIZO95785 1651 aa34.71■■■■□ 3.15
SSBP4-207ENST00000600244 ARHGEF11O15085 1522 aa34.71■■■■□ 3.15
SSBP4-207ENST00000600244 CYB5RLQ6IPT4 315 aa34.56■■■■□ 3.12
SSBP4-207ENST00000600244 ZNF608Q9ULD9 1512 aaPredicted RBP34.48■■■■□ 3.11
SSBP4-207ENST00000600244 TRHP20396 242 aaPredicted RBP34.47■■■■□ 3.11
SSBP4-207ENST00000600244 IFT140Q96RY7 1462 aa34.41■■■■□ 3.1
SSBP4-207ENST00000600244 ARAP1Q96P48 1450 aa34.32■■■■□ 3.08
SSBP4-207ENST00000600244 AEBP2Q6ZN18 517 aaPredicted RBP34.26■■■■□ 3.08
SSBP4-207ENST00000600244 TOP2AP11388 1531 aaKnown RBP34.2■■■■□ 3.07
SSBP4-207ENST00000600244 EIF4G3O43432 1585 aaKnown RBP34.15■■■■□ 3.06
SSBP4-207ENST00000600244 TOPBP1Q92547 1522 aa34.14■■■■□ 3.06
SSBP4-207ENST00000600244 RSF1Q96T23 1441 aaPredicted RBP34.14■■■■□ 3.06
SSBP4-207ENST00000600244 PRDM2Q13029 1718 aa34.13■■■■□ 3.05
SSBP4-207ENST00000600244 CHD1O14646 1710 aa34.1■■■■□ 3.05
SSBP4-207ENST00000600244 AQRO60306 1485 aaKnown RBP eCLIP34.04■■■■□ 3.045e-7■■■■■ 61.4
SSBP4-207ENST00000600244 ABCC8Q09428 1581 aa34■■■■□ 3.03
SSBP4-207ENST00000600244 FBLN2P98095 1184 aa33.98■■■■□ 3.03
SSBP4-207ENST00000600244 TARBP1Q13395 1621 aaKnown RBP33.93■■■■□ 3.02
SSBP4-207ENST00000600244 DNMBPQ6XZF7 1577 aa33.89■■■■□ 3.02
SSBP4-207ENST00000600244 CCDC88BA6NC98 1476 aa33.88■■■■□ 3.01
SSBP4-207ENST00000600244 CLASP1Q7Z460 1538 aa33.76■■■■□ 3
SSBP4-207ENST00000600244 POLA1P09884 1462 aaPredicted RBP33.73■■■□□ 2.99
SSBP4-207ENST00000600244 TDRD9Q8NDG6 1382 aaKnown RBP33.66■■■□□ 2.98
SSBP4-207ENST00000600244 RAD54L2Q9Y4B4 1467 aa33.63■■■□□ 2.97
SSBP4-207ENST00000600244 SNAPC4Q5SXM2 1469 aa33.61■■■□□ 2.97
SSBP4-207ENST00000600244 CHMP7Q8WUX9 453 aaPredicted RBP33.59■■■□□ 2.97
SSBP4-207ENST00000600244 SYNJ1O43426 1573 aa33.58■■■□□ 2.97
SSBP4-207ENST00000600244 SOGA1O94964 1423 aa33.57■■■□□ 2.96
SSBP4-207ENST00000600244 MAGI1Q96QZ7 1491 aaPredicted RBP33.5■■■□□ 2.95
SSBP4-207ENST00000600244 GAPVD1Q14C86 1478 aa33.48■■■□□ 2.95
SSBP4-207ENST00000600244 WDR97A6NE52 1622 aa33.47■■■□□ 2.95
SSBP4-207ENST00000600244 SYNJ2O15056 1496 aa33.4■■■□□ 2.94
SSBP4-207ENST00000600244 GRIN2BQ13224 1484 aa33.38■■■□□ 2.93
SSBP4-207ENST00000600244 FGD5Q6ZNL6 1462 aa33.35■■■□□ 2.93
SSBP4-207ENST00000600244 CUX1P39880 1505 aa33.16■■■□□ 2.9
SSBP4-207ENST00000600244 ERCC6L2Q5T890 1561 aa33.16■■■□□ 2.9
SSBP4-207ENST00000600244 PBRM1Q86U86 1689 aa33.08■■■□□ 2.89
SSBP4-207ENST00000600244 KIF13AQ9H1H9 1805 aa33■■■□□ 2.87
SSBP4-207ENST00000600244 ILDR1Q86SU0 546 aaPredicted RBP32.99■■■□□ 2.87
SSBP4-207ENST00000600244 CEP170Q5SW79 1584 aa32.98■■■□□ 2.87
SSBP4-207ENST00000600244 GRIN2AQ12879 1464 aa32.95■■■□□ 2.87
SSBP4-207ENST00000600244 ABCA5Q8WWZ7 1642 aa32.94■■■□□ 2.86
SSBP4-207ENST00000600244 NUP160Q12769 1436 aa32.93■■■□□ 2.86
SSBP4-207ENST00000600244 ABCA10Q8WWZ4 1543 aa32.92■■■□□ 2.86
SSBP4-207ENST00000600244 KDM4FA0A1W2PPD8 638 aa32.89■■■□□ 2.86
SSBP4-207ENST00000600244 SHROOM2Q13796 1616 aa32.87■■■□□ 2.85
SSBP4-207ENST00000600244 FAM69CQ0P6D2 419 aa32.78■■■□□ 2.84
SSBP4-207ENST00000600244 ADAMTS12P58397 1594 aa32.75■■■□□ 2.83
SSBP4-207ENST00000600244 ABCC10Q5T3U5 1492 aa32.75■■■□□ 2.83
SSBP4-207ENST00000600244 FHAD1B1AJZ9 1412 aa32.68■■■□□ 2.82
SSBP4-207ENST00000600244 PRG4Q92954 1404 aaPredicted RBP32.68■■■□□ 2.82
SSBP4-207ENST00000600244 JPH4Q96JJ6 628 aa32.61■■■□□ 2.81
SSBP4-207ENST00000600244 MAPKBP1O60336 1514 aa32.61■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms