RNA–Protein interactions for RNA: ENST00000378512.5

RER1-202, Transcript of retention in endoplasmic reticulum sorting receptor 1, humanhuman

TSL 1 (best) BASIC

Gene RER1, Length 1,404 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RER1-202ENST00000378512 NISCHQ9Y2I1 1504 aa41.88■■■■■ 4.29
RER1-202ENST00000378512 CCDC180Q9P1Z9 1646 aa37.42■■■■□ 3.58
RER1-202ENST00000378512 ABCC9O60706 1549 aa37.4■■■■□ 3.58
RER1-202ENST00000378512 RB1CC1Q8TDY2 1594 aa35.55■■■■□ 3.28
RER1-202ENST00000378512 NACADO15069 1562 aa35.33■■■■□ 3.25
RER1-202ENST00000378512 DCAF8L2P0C7V8 631 aa35.29■■■■□ 3.24
RER1-202ENST00000378512 DNAJC5BQ9UF47 199 aa35■■■■□ 3.19
RER1-202ENST00000378512 MYO15BQ96JP2 1530 aa34.95■■■■□ 3.19
RER1-202ENST00000378512 ZCCHC6Q5VYS8 1495 aaKnown RBP34.87■■■■□ 3.17
RER1-202ENST00000378512 PABPN1Q86U42 306 aaKnown RBP eCLIP34.87■■■■□ 3.17
RER1-202ENST00000378512 UNC13AQ9UPW8 1703 aa34.85■■■■□ 3.17
RER1-202ENST00000378512 DCAF1Q9Y4B6 1507 aa34.72■■■■□ 3.15
RER1-202ENST00000378512 BICRAQ9NZM4 1560 aa34.62■■■■□ 3.13
RER1-202ENST00000378512 SCRIBQ14160 1630 aa34.23■■■■□ 3.07
RER1-202ENST00000378512 SHROOM4Q9ULL8 1493 aa33.98■■■■□ 3.03
RER1-202ENST00000378512 CC2D2AQ9P2K1 1620 aa33.76■■■■□ 3
RER1-202ENST00000378512 EIF4G1Q04637 1599 aaKnown RBP33.72■■■□□ 2.99
RER1-202ENST00000378512 CECR2Q9BXF3 1484 aa33.62■■■□□ 2.97
RER1-202ENST00000378512 NCAPD3P42695 1498 aa32.65■■■□□ 2.82
RER1-202ENST00000378512 SMARCA4P51532 1647 aa32.62■■■□□ 2.81
RER1-202ENST00000378512 ATAD2BQ9ULI0 1458 aa32.61■■■□□ 2.81
RER1-202ENST00000378512 BAZ1AQ9NRL2 1556 aaPredicted RBP32.46■■■□□ 2.79
RER1-202ENST00000378512 SMARCA2P51531 1590 aa32.46■■■□□ 2.79
RER1-202ENST00000378512 HMGXB3Q12766 1538 aa32.41■■■□□ 2.78
RER1-202ENST00000378512 MROH2BQ7Z745 1585 aa32.3■■■□□ 2.76
RER1-202ENST00000378512 PEG3Q9GZU2 1588 aa32.3■■■□□ 2.76
RER1-202ENST00000378512 BAZ1BQ9UIG0 1483 aaKnown RBP32.28■■■□□ 2.76
RER1-202ENST00000378512 NESP48681 1621 aa32.21■■■□□ 2.75
RER1-202ENST00000378512 ERCC6Q03468 1493 aa32.21■■■□□ 2.75
RER1-202ENST00000378512 CUX2O14529 1486 aa32.05■■■□□ 2.72
RER1-202ENST00000378512 WIZO95785 1651 aa31.94■■■□□ 2.7
RER1-202ENST00000378512 DNAJC5Q9H3Z4 198 aa31.91■■■□□ 2.7
RER1-202ENST00000378512 LAMC3Q9Y6N6 1575 aa31.87■■■□□ 2.69
RER1-202ENST00000378512 RSF1Q96T23 1441 aaPredicted RBP31.81■■■□□ 2.68
RER1-202ENST00000378512 THOC2Q8NI27 1593 aaKnown RBP31.8■■■□□ 2.68
RER1-202ENST00000378512 KIF21AQ7Z4S6 1674 aa31.76■■■□□ 2.67
RER1-202ENST00000378512 CADPSQ9ULU8 1353 aa31.67■■■□□ 2.66
RER1-202ENST00000378512 PDS5BQ9NTI5 1447 aa31.66■■■□□ 2.66
RER1-202ENST00000378512 TOP2AP11388 1531 aaKnown RBP31.56■■■□□ 2.64
RER1-202ENST00000378512 MRC2Q9UBG0 1479 aa31.43■■■□□ 2.62
RER1-202ENST00000378512 WDR62O43379 1518 aa31.36■■■□□ 2.61
RER1-202ENST00000378512 CFTRP13569 1480 aa31.35■■■□□ 2.61
RER1-202ENST00000378512 FANCD2Q9BXW9 1451 aa31.34■■■□□ 2.61
RER1-202ENST00000378512 CEP164Q9UPV0 1460 aa31.33■■■□□ 2.61
RER1-202ENST00000378512 CCDC88BA6NC98 1476 aa31.16■■■□□ 2.58
RER1-202ENST00000378512 URB2Q14146 1524 aaKnown RBP31.12■■■□□ 2.57
RER1-202ENST00000378512 PRDM2Q13029 1718 aa31.08■■■□□ 2.57
RER1-202ENST00000378512 TOPBP1Q92547 1522 aa30.77■■■□□ 2.52
RER1-202ENST00000378512 ZNF608Q9ULD9 1512 aaPredicted RBP30.73■■■□□ 2.51
RER1-202ENST00000378512 SUPT5HO00267 1087 aaKnown RBP30.69■■■□□ 2.5
RER1-202ENST00000378512 IFT140Q96RY7 1462 aa30.68■■■□□ 2.5
RER1-202ENST00000378512 DNMBPQ6XZF7 1577 aa30.65■■■□□ 2.5
RER1-202ENST00000378512 TRIM41Q8WV44 630 aa30.64■■■□□ 2.49
RER1-202ENST00000378512 OSCARQ8IYS5 282 aa30.62■■■□□ 2.49
RER1-202ENST00000378512 ABCC8Q09428 1581 aa30.59■■■□□ 2.49
RER1-202ENST00000378512 EIF4G3O43432 1585 aaKnown RBP30.53■■■□□ 2.48
RER1-202ENST00000378512 TARBP1Q13395 1621 aaKnown RBP30.5■■■□□ 2.47
RER1-202ENST00000378512 POLA1P09884 1462 aaPredicted RBP30.47■■■□□ 2.47
RER1-202ENST00000378512 AQRO60306 1485 aaKnown RBP eCLIP30.44■■■□□ 2.462e-6■■■□□ 15.2
RER1-202ENST00000378512 RAD54L2Q9Y4B4 1467 aa30.41■■■□□ 2.46
RER1-202ENST00000378512 CUX1P39880 1505 aa30.33■■■□□ 2.45
RER1-202ENST00000378512 FGD5Q6ZNL6 1462 aa30.31■■■□□ 2.44
RER1-202ENST00000378512 SOGA1O94964 1423 aa30.31■■■□□ 2.44
RER1-202ENST00000378512 RIMBP3CA6NJZ7 1639 aa30.29■■■□□ 2.44
RER1-202ENST00000378512 RIMBP3BA6NNM3 1639 aa30.29■■■□□ 2.44
RER1-202ENST00000378512 RIMBP3Q9UFD9 1639 aa30.29■■■□□ 2.44
RER1-202ENST00000378512 TDRD9Q8NDG6 1382 aaKnown RBP30.28■■■□□ 2.44
RER1-202ENST00000378512 CHD1O14646 1710 aa30.28■■■□□ 2.44
RER1-202ENST00000378512 ARHGEF11O15085 1522 aa30.19■■■□□ 2.42
RER1-202ENST00000378512 FBLN2P98095 1184 aa30.18■■■□□ 2.42
RER1-202ENST00000378512 SNAPC4Q5SXM2 1469 aa30.12■■■□□ 2.41
RER1-202ENST00000378512 WDR97A6NE52 1622 aa30.09■■■□□ 2.41
RER1-202ENST00000378512 BIVM-ERCC5R4GMW8 1640 aa30.03■■■□□ 2.4
RER1-202ENST00000378512 GRIN2BQ13224 1484 aa30.01■■■□□ 2.39
RER1-202ENST00000378512 TOP2BQ02880 1626 aa30■■■□□ 2.39
RER1-202ENST00000378512 MAGI1Q96QZ7 1491 aaPredicted RBP29.98■■■□□ 2.39
RER1-202ENST00000378512 WRNQ14191 1432 aaPredicted RBP eCLIP29.96■■■□□ 2.394e-8■■■■■ 27.9
RER1-202ENST00000378512 CYB5RLQ6IPT4 315 aa29.96■■■□□ 2.39
RER1-202ENST00000378512 SYNJ1O43426 1573 aa29.95■■■□□ 2.39
RER1-202ENST00000378512 PBRM1Q86U86 1689 aa29.95■■■□□ 2.38
RER1-202ENST00000378512 GAPVD1Q14C86 1478 aa29.94■■■□□ 2.38
RER1-202ENST00000378512 ARAP1Q96P48 1450 aa29.94■■■□□ 2.38
RER1-202ENST00000378512 CHMP7Q8WUX9 453 aaPredicted RBP29.94■■■□□ 2.38
RER1-202ENST00000378512 ABCA10Q8WWZ4 1543 aa29.93■■■□□ 2.38
RER1-202ENST00000378512 CLASP1Q7Z460 1538 aa29.92■■■□□ 2.38
RER1-202ENST00000378512 ABCA5Q8WWZ7 1642 aa29.91■■■□□ 2.38
RER1-202ENST00000378512 SYNJ2O15056 1496 aa29.89■■■□□ 2.38
RER1-202ENST00000378512 ADAMTS12P58397 1594 aa29.68■■■□□ 2.34
RER1-202ENST00000378512 GRIN2AQ12879 1464 aa29.65■■■□□ 2.34
RER1-202ENST00000378512 CEP170Q5SW79 1584 aa29.59■■■□□ 2.33
RER1-202ENST00000378512 TRHP20396 242 aaPredicted RBP29.56■■■□□ 2.32
RER1-202ENST00000378512 ERCC6L2Q5T890 1561 aa29.56■■■□□ 2.32
RER1-202ENST00000378512 ERICH3Q5RHP9 1530 aa29.56■■■□□ 2.32
RER1-202ENST00000378512 FHAD1B1AJZ9 1412 aa29.55■■■□□ 2.32
RER1-202ENST00000378512 NUP160Q12769 1436 aa29.54■■■□□ 2.32
RER1-202ENST00000378512 SHROOM2Q13796 1616 aa29.4■■■□□ 2.3
RER1-202ENST00000378512 KIF27Q86VH2 1401 aa29.34■■■□□ 2.29
RER1-202ENST00000378512 IGF1RP08069 1367 aa29.27■■■□□ 2.28
RER1-202ENST00000378512 RUSC2Q8N2Y8 1516 aa29.26■■■□□ 2.28
RER1-202ENST00000378512 CUL7Q14999 1698 aa29.26■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms