RNA–Protein interactions for RNA: ENST00000447868.5

UFD1-204, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 3

Gene UFD1, Length 596 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-204ENST00000447868 NISCHQ9Y2I1 1504 aa60.86■■■■■ 7.33
UFD1-204ENST00000447868 CCDC180Q9P1Z9 1646 aa54.15■■■■■ 6.26
UFD1-204ENST00000447868 ABCC9O60706 1549 aa53.21■■■■■ 6.11
UFD1-204ENST00000447868 RB1CC1Q8TDY2 1594 aa51.06■■■■■ 5.76
UFD1-204ENST00000447868 DCAF8L2P0C7V8 631 aa51.04■■■■■ 5.76
UFD1-204ENST00000447868 NACADO15069 1562 aa50.94■■■■■ 5.74
UFD1-204ENST00000447868 ZCCHC6Q5VYS8 1495 aaKnown RBP50.66■■■■■ 5.7
UFD1-204ENST00000447868 MYO15BQ96JP2 1530 aa50.52■■■■■ 5.68
UFD1-204ENST00000447868 DCAF1Q9Y4B6 1507 aa50.28■■■■■ 5.64
UFD1-204ENST00000447868 UNC13AQ9UPW8 1703 aa49.95■■■■■ 5.59
UFD1-204ENST00000447868 PABPN1Q86U42 306 aaKnown RBP eCLIP49.73■■■■■ 5.55
UFD1-204ENST00000447868 BICRAQ9NZM4 1560 aa49.52■■■■■ 5.52
UFD1-204ENST00000447868 SCRIBQ14160 1630 aa49.49■■■■■ 5.51
UFD1-204ENST00000447868 DNAJC5BQ9UF47 199 aa48.96■■■■■ 5.43
UFD1-204ENST00000447868 SHROOM4Q9ULL8 1493 aa48.89■■■■■ 5.42
UFD1-204ENST00000447868 EIF4G1Q04637 1599 aaKnown RBP48.23■■■■■ 5.31
UFD1-204ENST00000447868 CC2D2AQ9P2K1 1620 aa48.1■■■■■ 5.29
UFD1-204ENST00000447868 CECR2Q9BXF3 1484 aa47.79■■■■■ 5.24
UFD1-204ENST00000447868 SMARCA4P51532 1647 aa47.27■■■■■ 5.16
UFD1-204ENST00000447868 BAZ1AQ9NRL2 1556 aaPredicted RBP47.17■■■■■ 5.14
UFD1-204ENST00000447868 ATAD2BQ9ULI0 1458 aa47.04■■■■■ 5.12
UFD1-204ENST00000447868 NCAPD3P42695 1498 aa47■■■■■ 5.11
UFD1-204ENST00000447868 SMARCA2P51531 1590 aa46.96■■■■■ 5.11
UFD1-204ENST00000447868 MROH2BQ7Z745 1585 aa46.94■■■■■ 5.1
UFD1-204ENST00000447868 HMGXB3Q12766 1538 aa46.75■■■■■ 5.07
UFD1-204ENST00000447868 PEG3Q9GZU2 1588 aa46.75■■■■■ 5.07
UFD1-204ENST00000447868 BAZ1BQ9UIG0 1483 aaKnown RBP46.67■■■■■ 5.06
UFD1-204ENST00000447868 WIZO95785 1651 aa46.46■■■■■ 5.03
UFD1-204ENST00000447868 RSF1Q96T23 1441 aaPredicted RBP46.33■■■■■ 5.01
UFD1-204ENST00000447868 NESP48681 1621 aa46■■■■■ 4.95
UFD1-204ENST00000447868 TOP2AP11388 1531 aaKnown RBP45.91■■■■■ 4.94
UFD1-204ENST00000447868 ERCC6Q03468 1493 aa45.87■■■■■ 4.93
UFD1-204ENST00000447868 LAMC3Q9Y6N6 1575 aa45.79■■■■■ 4.92
UFD1-204ENST00000447868 CADPSQ9ULU8 1353 aa45.65■■■■■ 4.9
UFD1-204ENST00000447868 PDS5BQ9NTI5 1447 aa45.51■■■■■ 4.88
UFD1-204ENST00000447868 KIF21AQ7Z4S6 1674 aa45.46■■■■■ 4.87
UFD1-204ENST00000447868 CCDC88BA6NC98 1476 aa45.39■■■■■ 4.86
UFD1-204ENST00000447868 CUX2O14529 1486 aa45.36■■■■■ 4.85
UFD1-204ENST00000447868 CFTRP13569 1480 aa45.34■■■■■ 4.85
UFD1-204ENST00000447868 THOC2Q8NI27 1593 aaKnown RBP45.29■■■■■ 4.84
UFD1-204ENST00000447868 SUPT5HO00267 1087 aaKnown RBP45.17■■■■■ 4.82
UFD1-204ENST00000447868 FANCD2Q9BXW9 1451 aa45.16■■■■■ 4.82
UFD1-204ENST00000447868 CEP164Q9UPV0 1460 aa45.1■■■■■ 4.81
UFD1-204ENST00000447868 MRC2Q9UBG0 1479 aa45.06■■■■■ 4.8
UFD1-204ENST00000447868 PRDM2Q13029 1718 aa45.02■■■■■ 4.8
UFD1-204ENST00000447868 WDR62O43379 1518 aa44.91■■■■■ 4.78
UFD1-204ENST00000447868 URB2Q14146 1524 aaKnown RBP44.71■■■■■ 4.75
UFD1-204ENST00000447868 TOPBP1Q92547 1522 aa44.41■■■■■ 4.7
UFD1-204ENST00000447868 ABCC8Q09428 1581 aa44.35■■■■■ 4.69
UFD1-204ENST00000447868 DNMBPQ6XZF7 1577 aa44.34■■■■■ 4.69
UFD1-204ENST00000447868 DNAJC5Q9H3Z4 198 aa44.15■■■■■ 4.66
UFD1-204ENST00000447868 IFT140Q96RY7 1462 aa44.15■■■■■ 4.66
UFD1-204ENST00000447868 CUX1P39880 1505 aa44.04■■■■■ 4.64
UFD1-204ENST00000447868 POLA1P09884 1462 aaPredicted RBP44.02■■■■■ 4.64
UFD1-204ENST00000447868 ZNF608Q9ULD9 1512 aaPredicted RBP44■■■■■ 4.63
UFD1-204ENST00000447868 TARBP1Q13395 1621 aaKnown RBP43.93■■■■■ 4.62
UFD1-204ENST00000447868 FGD5Q6ZNL6 1462 aa43.91■■■■■ 4.62
UFD1-204ENST00000447868 RAD54L2Q9Y4B4 1467 aa43.88■■■■■ 4.61
UFD1-204ENST00000447868 SOGA1O94964 1423 aa43.85■■■■■ 4.61
UFD1-204ENST00000447868 EIF4G3O43432 1585 aaKnown RBP43.82■■■■■ 4.61
UFD1-204ENST00000447868 AQRO60306 1485 aaKnown RBP eCLIP43.76■■■■■ 4.69e-8■■■■■ 27.3
UFD1-204ENST00000447868 WRNQ14191 1432 aaPredicted RBP eCLIP43.7■■■■■ 4.59
UFD1-204ENST00000447868 TDRD9Q8NDG6 1382 aaKnown RBP43.65■■■■■ 4.58
UFD1-204ENST00000447868 SYNJ1O43426 1573 aa43.62■■■■■ 4.57
UFD1-204ENST00000447868 TOP2BQ02880 1626 aa43.6■■■■■ 4.57
UFD1-204ENST00000447868 BIVM-ERCC5R4GMW8 1640 aa43.6■■■■■ 4.57
UFD1-204ENST00000447868 WDR97A6NE52 1622 aa43.54■■■■■ 4.56
UFD1-204ENST00000447868 OSCARQ8IYS5 282 aa43.49■■■■■ 4.55
UFD1-204ENST00000447868 ABCA10Q8WWZ4 1543 aa43.44■■■■■ 4.54
UFD1-204ENST00000447868 GRIN2BQ13224 1484 aa43.33■■■■■ 4.53
UFD1-204ENST00000447868 GAPVD1Q14C86 1478 aa43.33■■■■■ 4.53
UFD1-204ENST00000447868 SNAPC4Q5SXM2 1469 aa43.33■■■■■ 4.53
UFD1-204ENST00000447868 CHD1O14646 1710 aa43.32■■■■■ 4.53
UFD1-204ENST00000447868 FBLN2P98095 1184 aa43.31■■■■■ 4.52
UFD1-204ENST00000447868 ABCA5Q8WWZ7 1642 aa43.3■■■■■ 4.52
UFD1-204ENST00000447868 PBRM1Q86U86 1689 aa43.28■■■■■ 4.52
UFD1-204ENST00000447868 MAGI1Q96QZ7 1491 aaPredicted RBP43.22■■■■■ 4.51
UFD1-204ENST00000447868 CHMP7Q8WUX9 453 aaPredicted RBP43.11■■■■■ 4.49
UFD1-204ENST00000447868 SYNJ2O15056 1496 aa43.07■■■■■ 4.49
UFD1-204ENST00000447868 ERICH3Q5RHP9 1530 aa42.92■■■■■ 4.46
UFD1-204ENST00000447868 ADAMTS12P58397 1594 aa42.9■■■■■ 4.46
UFD1-204ENST00000447868 RIMBP3CA6NJZ7 1639 aa42.84■■■■■ 4.45
UFD1-204ENST00000447868 RIMBP3BA6NNM3 1639 aa42.84■■■■■ 4.45
UFD1-204ENST00000447868 RIMBP3Q9UFD9 1639 aa42.84■■■■■ 4.45
UFD1-204ENST00000447868 FHAD1B1AJZ9 1412 aa42.81■■■■■ 4.44
UFD1-204ENST00000447868 ARHGEF11O15085 1522 aa42.79■■■■■ 4.44
UFD1-204ENST00000447868 CLASP1Q7Z460 1538 aa42.79■■■■■ 4.44
UFD1-204ENST00000447868 GRIN2AQ12879 1464 aa42.79■■■■■ 4.44
UFD1-204ENST00000447868 KIF27Q86VH2 1401 aa42.79■■■■■ 4.44
UFD1-204ENST00000447868 TRIM41Q8WV44 630 aa42.77■■■■■ 4.44
UFD1-204ENST00000447868 IGF1RP08069 1367 aa42.63■■■■■ 4.41
UFD1-204ENST00000447868 CEP170Q5SW79 1584 aa42.61■■■■■ 4.41
UFD1-204ENST00000447868 NUP160Q12769 1436 aa42.57■■■■■ 4.41
UFD1-204ENST00000447868 CUL7Q14999 1698 aa42.52■■■■■ 4.4
UFD1-204ENST00000447868 CYB5RLQ6IPT4 315 aa42.46■■■■■ 4.39
UFD1-204ENST00000447868 ARAP1Q96P48 1450 aa42.44■■■■■ 4.38
UFD1-204ENST00000447868 RUSC2Q8N2Y8 1516 aa42.41■■■■■ 4.38
UFD1-204ENST00000447868 CARMIL1Q5VZK9 1371 aa42.39■■■■■ 4.38
UFD1-204ENST00000447868 SHROOM2Q13796 1616 aa42.28■■■■■ 4.36
UFD1-204ENST00000447868 ERCC6L2Q5T890 1561 aa42.25■■■■■ 4.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms