RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 NISCHQ9Y2I1 1504 aa48.58■■■■■ 5.37
SSBP4-210ENST00000601444 CCDC180Q9P1Z9 1646 aa43.04■■■■■ 4.48
SSBP4-210ENST00000601444 ABCC9O60706 1549 aa42.2■■■■■ 4.35
SSBP4-210ENST00000601444 DCAF8L2P0C7V8 631 aa40.69■■■■■ 4.1
SSBP4-210ENST00000601444 RB1CC1Q8TDY2 1594 aa40.5■■■■■ 4.07
SSBP4-210ENST00000601444 NACADO15069 1562 aa40.48■■■■■ 4.07
SSBP4-210ENST00000601444 ZCCHC6Q5VYS8 1495 aaKnown RBP40.47■■■■■ 4.07
SSBP4-210ENST00000601444 MYO15BQ96JP2 1530 aa40.23■■■■■ 4.03
SSBP4-210ENST00000601444 DCAF1Q9Y4B6 1507 aa40.11■■■■■ 4.01
SSBP4-210ENST00000601444 UNC13AQ9UPW8 1703 aa39.62■■■■□ 3.93
SSBP4-210ENST00000601444 PABPN1Q86U42 306 aaKnown RBP eCLIP39.52■■■■□ 3.924e-7■■■■□ 19.8
SSBP4-210ENST00000601444 SCRIBQ14160 1630 aa39.4■■■■□ 3.9
SSBP4-210ENST00000601444 BICRAQ9NZM4 1560 aa39.36■■■■□ 3.89
SSBP4-210ENST00000601444 SHROOM4Q9ULL8 1493 aa38.79■■■■□ 3.8
SSBP4-210ENST00000601444 DNAJC5BQ9UF47 199 aa38.75■■■■□ 3.79
SSBP4-210ENST00000601444 EIF4G1Q04637 1599 aaKnown RBP38.28■■■■□ 3.72
SSBP4-210ENST00000601444 CC2D2AQ9P2K1 1620 aa38.12■■■■□ 3.69
SSBP4-210ENST00000601444 CECR2Q9BXF3 1484 aa37.92■■■■□ 3.66
SSBP4-210ENST00000601444 SMARCA4P51532 1647 aa37.65■■■■□ 3.62
SSBP4-210ENST00000601444 BAZ1AQ9NRL2 1556 aaPredicted RBP37.59■■■■□ 3.61
SSBP4-210ENST00000601444 MROH2BQ7Z745 1585 aa37.5■■■■□ 3.59
SSBP4-210ENST00000601444 ATAD2BQ9ULI0 1458 aa37.46■■■■□ 3.59
SSBP4-210ENST00000601444 NCAPD3P42695 1498 aa37.4■■■■□ 3.58
SSBP4-210ENST00000601444 SMARCA2P51531 1590 aa37.34■■■■□ 3.57
SSBP4-210ENST00000601444 PEG3Q9GZU2 1588 aa37.25■■■■□ 3.55
SSBP4-210ENST00000601444 HMGXB3Q12766 1538 aa37.17■■■■□ 3.54
SSBP4-210ENST00000601444 BAZ1BQ9UIG0 1483 aaKnown RBP37.13■■■■□ 3.54
SSBP4-210ENST00000601444 RSF1Q96T23 1441 aaPredicted RBP37.1■■■■□ 3.53
SSBP4-210ENST00000601444 WIZO95785 1651 aa37.09■■■■□ 3.53
SSBP4-210ENST00000601444 TOP2AP11388 1531 aaKnown RBP36.64■■■■□ 3.46
SSBP4-210ENST00000601444 NESP48681 1621 aa36.56■■■■□ 3.44
SSBP4-210ENST00000601444 LAMC3Q9Y6N6 1575 aa36.36■■■■□ 3.41
SSBP4-210ENST00000601444 CADPSQ9ULU8 1353 aa36.34■■■■□ 3.41
SSBP4-210ENST00000601444 SUPT5HO00267 1087 aaKnown RBP36.31■■■■□ 3.4
SSBP4-210ENST00000601444 ERCC6Q03468 1493 aa36.3■■■■□ 3.4
SSBP4-210ENST00000601444 CCDC88BA6NC98 1476 aa36.28■■■■□ 3.4
SSBP4-210ENST00000601444 CFTRP13569 1480 aa36.13■■■■□ 3.37
SSBP4-210ENST00000601444 PDS5BQ9NTI5 1447 aa36.13■■■■□ 3.37
SSBP4-210ENST00000601444 KIF21AQ7Z4S6 1674 aa36.05■■■■□ 3.36
SSBP4-210ENST00000601444 FANCD2Q9BXW9 1451 aa35.92■■■■□ 3.34
SSBP4-210ENST00000601444 THOC2Q8NI27 1593 aaKnown RBP35.89■■■■□ 3.34
SSBP4-210ENST00000601444 CEP164Q9UPV0 1460 aa35.84■■■■□ 3.33
SSBP4-210ENST00000601444 CUX2O14529 1486 aa35.83■■■■□ 3.33
SSBP4-210ENST00000601444 MRC2Q9UBG0 1479 aa35.77■■■■□ 3.32
SSBP4-210ENST00000601444 PRDM2Q13029 1718 aa35.74■■■■□ 3.31
SSBP4-210ENST00000601444 WDR62O43379 1518 aa35.64■■■■□ 3.3
SSBP4-210ENST00000601444 URB2Q14146 1524 aaKnown RBP35.58■■■■□ 3.29
SSBP4-210ENST00000601444 TOPBP1Q92547 1522 aa35.36■■■■□ 3.25
SSBP4-210ENST00000601444 DNMBPQ6XZF7 1577 aa35.29■■■■□ 3.24
SSBP4-210ENST00000601444 ABCC8Q09428 1581 aa35.27■■■■□ 3.24
SSBP4-210ENST00000601444 CUX1P39880 1505 aa35.15■■■■□ 3.22
SSBP4-210ENST00000601444 IFT140Q96RY7 1462 aa35.08■■■■□ 3.21
SSBP4-210ENST00000601444 POLA1P09884 1462 aaPredicted RBP35.07■■■■□ 3.2
SSBP4-210ENST00000601444 FGD5Q6ZNL6 1462 aa35.01■■■■□ 3.19
SSBP4-210ENST00000601444 ZNF608Q9ULD9 1512 aaPredicted RBP35■■■■□ 3.19
SSBP4-210ENST00000601444 RAD54L2Q9Y4B4 1467 aa34.98■■■■□ 3.19
SSBP4-210ENST00000601444 TARBP1Q13395 1621 aaKnown RBP34.95■■■■□ 3.19
SSBP4-210ENST00000601444 SOGA1O94964 1423 aa34.95■■■■□ 3.19
SSBP4-210ENST00000601444 WRNQ14191 1432 aaPredicted RBP eCLIP34.94■■■■□ 3.18
SSBP4-210ENST00000601444 SYNJ1O43426 1573 aa34.87■■■■□ 3.17
SSBP4-210ENST00000601444 AQRO60306 1485 aaKnown RBP eCLIP34.83■■■■□ 3.174e-7■■■■■ 57.1
SSBP4-210ENST00000601444 TOP2BQ02880 1626 aa34.82■■■■□ 3.16
SSBP4-210ENST00000601444 BIVM-ERCC5R4GMW8 1640 aa34.8■■■■□ 3.16
SSBP4-210ENST00000601444 EIF4G3O43432 1585 aaKnown RBP34.79■■■■□ 3.16
SSBP4-210ENST00000601444 TDRD9Q8NDG6 1382 aaKnown RBP34.78■■■■□ 3.16
SSBP4-210ENST00000601444 DNAJC5Q9H3Z4 198 aa34.72■■■■□ 3.15
SSBP4-210ENST00000601444 WDR97A6NE52 1622 aa34.65■■■■□ 3.14
SSBP4-210ENST00000601444 ABCA10Q8WWZ4 1543 aa34.63■■■■□ 3.13
SSBP4-210ENST00000601444 GAPVD1Q14C86 1478 aa34.52■■■■□ 3.12
SSBP4-210ENST00000601444 GRIN2BQ13224 1484 aa34.48■■■■□ 3.11
SSBP4-210ENST00000601444 ABCA5Q8WWZ7 1642 aa34.48■■■■□ 3.11
SSBP4-210ENST00000601444 SNAPC4Q5SXM2 1469 aa34.46■■■■□ 3.11
SSBP4-210ENST00000601444 OSCARQ8IYS5 282 aa34.45■■■■□ 3.11
SSBP4-210ENST00000601444 FBLN2P98095 1184 aa34.4■■■■□ 3.1
SSBP4-210ENST00000601444 PBRM1Q86U86 1689 aa34.39■■■■□ 3.1
SSBP4-210ENST00000601444 MAGI1Q96QZ7 1491 aaPredicted RBP34.35■■■■□ 3.09
SSBP4-210ENST00000601444 CHD1O14646 1710 aa34.32■■■■□ 3.08
SSBP4-210ENST00000601444 CHMP7Q8WUX9 453 aaPredicted RBP34.28■■■■□ 3.08
SSBP4-210ENST00000601444 SYNJ2O15056 1496 aa34.25■■■■□ 3.07
SSBP4-210ENST00000601444 TRIM41Q8WV44 630 aa34.24■■■■□ 3.07
SSBP4-210ENST00000601444 ERICH3Q5RHP9 1530 aa34.2■■■■□ 3.06
SSBP4-210ENST00000601444 KIF27Q86VH2 1401 aa34.18■■■■□ 3.06
SSBP4-210ENST00000601444 ADAMTS12P58397 1594 aa34.14■■■■□ 3.06
SSBP4-210ENST00000601444 FHAD1B1AJZ9 1412 aa34.11■■■■□ 3.05
SSBP4-210ENST00000601444 IGF1RP08069 1367 aa34.1■■■■□ 3.05
SSBP4-210ENST00000601444 GRIN2AQ12879 1464 aa34.05■■■■□ 3.04
SSBP4-210ENST00000601444 RUSC2Q8N2Y8 1516 aa34.04■■■■□ 3.04
SSBP4-210ENST00000601444 CLASP1Q7Z460 1538 aa33.96■■■■□ 3.03
SSBP4-210ENST00000601444 CHIC1Q5VXU3 224 aa33.93■■■■□ 3.02
SSBP4-210ENST00000601444 CEP170Q5SW79 1584 aa33.89■■■■□ 3.02
SSBP4-210ENST00000601444 NUP160Q12769 1436 aa33.89■■■■□ 3.02
SSBP4-210ENST00000601444 CARMIL1Q5VZK9 1371 aa33.87■■■■□ 3.01
SSBP4-210ENST00000601444 CUL7Q14999 1698 aa33.87■■■■□ 3.01
SSBP4-210ENST00000601444 ARHGEF11O15085 1522 aa33.86■■■■□ 3.01
SSBP4-210ENST00000601444 RIMBP3CA6NJZ7 1639 aa33.86■■■■□ 3.01
SSBP4-210ENST00000601444 RIMBP3BA6NNM3 1639 aa33.86■■■■□ 3.01
SSBP4-210ENST00000601444 RIMBP3Q9UFD9 1639 aa33.86■■■■□ 3.01
SSBP4-210ENST00000601444 RAPGEF2Q9Y4G8 1499 aa33.65■■■□□ 2.98
SSBP4-210ENST00000601444 CYB5RLQ6IPT4 315 aa33.63■■■□□ 2.97
SSBP4-210ENST00000601444 ARAP1Q96P48 1450 aa33.63■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms