RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 NISCHQ9Y2I1 1504 aa33.04■■■□□ 2.88
HMGA1-203ENST00000374116 CCDC180Q9P1Z9 1646 aa29.12■■■□□ 2.25
HMGA1-203ENST00000374116 ABCC9O60706 1549 aa28.4■■■□□ 2.14
HMGA1-203ENST00000374116 DCAF8L2P0C7V8 631 aa27.72■■■□□ 2.03
HMGA1-203ENST00000374116 ZCCHC6Q5VYS8 1495 aaKnown RBP27.57■■■□□ 2
HMGA1-203ENST00000374116 NACADO15069 1562 aa27.31■■□□□ 1.96
HMGA1-203ENST00000374116 RB1CC1Q8TDY2 1594 aa27.29■■□□□ 1.96
HMGA1-203ENST00000374116 DCAF1Q9Y4B6 1507 aa27.21■■□□□ 1.95
HMGA1-203ENST00000374116 MYO15BQ96JP2 1530 aa27.17■■□□□ 1.94
HMGA1-203ENST00000374116 SCRIBQ14160 1630 aa26.8■■□□□ 1.88
HMGA1-203ENST00000374116 UNC13AQ9UPW8 1703 aa26.79■■□□□ 1.88
HMGA1-203ENST00000374116 PABPN1Q86U42 306 aaKnown RBP eCLIP26.67■■□□□ 1.86
HMGA1-203ENST00000374116 SHROOM4Q9ULL8 1493 aa26.58■■□□□ 1.85
HMGA1-203ENST00000374116 BICRAQ9NZM4 1560 aa26.53■■□□□ 1.84
HMGA1-203ENST00000374116 DNAJC5BQ9UF47 199 aa25.83■■□□□ 1.73
HMGA1-203ENST00000374116 CECR2Q9BXF3 1484 aa25.82■■□□□ 1.72
HMGA1-203ENST00000374116 EIF4G1Q04637 1599 aaKnown RBP25.79■■□□□ 1.72
HMGA1-203ENST00000374116 CC2D2AQ9P2K1 1620 aa25.64■■□□□ 1.69
HMGA1-203ENST00000374116 SMARCA4P51532 1647 aa25.58■■□□□ 1.69
HMGA1-203ENST00000374116 MROH2BQ7Z745 1585 aa25.55■■□□□ 1.68
HMGA1-203ENST00000374116 BAZ1AQ9NRL2 1556 aaPredicted RBP25.55■■□□□ 1.68
HMGA1-203ENST00000374116 ATAD2BQ9ULI0 1458 aa25.35■■□□□ 1.65
HMGA1-203ENST00000374116 RSF1Q96T23 1441 aaPredicted RBP25.35■■□□□ 1.65
HMGA1-203ENST00000374116 WIZO95785 1651 aa25.32■■□□□ 1.64
HMGA1-203ENST00000374116 SMARCA2P51531 1590 aa25.27■■□□□ 1.64
HMGA1-203ENST00000374116 NCAPD3P42695 1498 aa25.22■■□□□ 1.63
HMGA1-203ENST00000374116 PEG3Q9GZU2 1588 aa25.22■■□□□ 1.63
HMGA1-203ENST00000374116 BAZ1BQ9UIG0 1483 aaKnown RBP25.16■■□□□ 1.62
HMGA1-203ENST00000374116 SUPT5HO00267 1087 aaKnown RBP25.16■■□□□ 1.62
HMGA1-203ENST00000374116 HMGXB3Q12766 1538 aa25.11■■□□□ 1.61
HMGA1-203ENST00000374116 TOP2AP11388 1531 aaKnown RBP24.95■■□□□ 1.59
HMGA1-203ENST00000374116 CCDC88BA6NC98 1476 aa24.74■■□□□ 1.55
HMGA1-203ENST00000374116 NESP48681 1621 aa24.7■■□□□ 1.54
HMGA1-203ENST00000374116 CADPSQ9ULU8 1353 aa24.56■■□□□ 1.52
HMGA1-203ENST00000374116 LAMC3Q9Y6N6 1575 aa24.5■■□□□ 1.51
HMGA1-203ENST00000374116 CFTRP13569 1480 aa24.46■■□□□ 1.51
HMGA1-203ENST00000374116 ERCC6Q03468 1493 aa24.39■■□□□ 1.5
HMGA1-203ENST00000374116 KIF21AQ7Z4S6 1674 aa24.36■■□□□ 1.49
HMGA1-203ENST00000374116 PDS5BQ9NTI5 1447 aa24.34■■□□□ 1.49
HMGA1-203ENST00000374116 FANCD2Q9BXW9 1451 aa24.3■■□□□ 1.48
HMGA1-203ENST00000374116 PRDM2Q13029 1718 aa24.28■■□□□ 1.48
HMGA1-203ENST00000374116 CEP164Q9UPV0 1460 aa24.21■■□□□ 1.47
HMGA1-203ENST00000374116 THOC2Q8NI27 1593 aaKnown RBP24.13■■□□□ 1.45
HMGA1-203ENST00000374116 MRC2Q9UBG0 1479 aa24.09■■□□□ 1.45
HMGA1-203ENST00000374116 URB2Q14146 1524 aaKnown RBP24.06■■□□□ 1.44
HMGA1-203ENST00000374116 ABCC8Q09428 1581 aa24.02■■□□□ 1.44
HMGA1-203ENST00000374116 WDR62O43379 1518 aa23.98■■□□□ 1.43
HMGA1-203ENST00000374116 TOPBP1Q92547 1522 aa23.95■■□□□ 1.43
HMGA1-203ENST00000374116 CUX1P39880 1505 aa23.92■■□□□ 1.42
HMGA1-203ENST00000374116 DNMBPQ6XZF7 1577 aa23.91■■□□□ 1.42
HMGA1-203ENST00000374116 CHIC1Q5VXU3 224 aa23.9■■□□□ 1.42
HMGA1-203ENST00000374116 WRNQ14191 1432 aaPredicted RBP eCLIP23.88■■□□□ 1.41
HMGA1-203ENST00000374116 CUX2O14529 1486 aa23.87■■□□□ 1.41
HMGA1-203ENST00000374116 SYNJ1O43426 1573 aa23.85■■□□□ 1.41
HMGA1-203ENST00000374116 FGD5Q6ZNL6 1462 aa23.79■■□□□ 1.4
HMGA1-203ENST00000374116 POLA1P09884 1462 aaPredicted RBP23.78■■□□□ 1.4
HMGA1-203ENST00000374116 RAD54L2Q9Y4B4 1467 aa23.76■■□□□ 1.39
HMGA1-203ENST00000374116 TOP2BQ02880 1626 aa23.76■■□□□ 1.39
HMGA1-203ENST00000374116 BIVM-ERCC5R4GMW8 1640 aa23.74■■□□□ 1.39
HMGA1-203ENST00000374116 DNAJC5Q9H3Z4 198 aa23.73■■□□□ 1.39
HMGA1-203ENST00000374116 SOGA1O94964 1423 aa23.7■■□□□ 1.38
HMGA1-203ENST00000374116 ZNF608Q9ULD9 1512 aaPredicted RBP23.66■■□□□ 1.38
HMGA1-203ENST00000374116 IFT140Q96RY7 1462 aa23.65■■□□□ 1.38
HMGA1-203ENST00000374116 TARBP1Q13395 1621 aaKnown RBP23.65■■□□□ 1.38
HMGA1-203ENST00000374116 TRIM41Q8WV44 630 aa23.63■■□□□ 1.37
HMGA1-203ENST00000374116 TDRD9Q8NDG6 1382 aaKnown RBP23.59■■□□□ 1.37
HMGA1-203ENST00000374116 AQRO60306 1485 aaKnown RBP eCLIP23.58■■□□□ 1.369e-9■■■■■ 67.4
HMGA1-203ENST00000374116 WDR97A6NE52 1622 aa23.52■■□□□ 1.36
HMGA1-203ENST00000374116 EIF4G3O43432 1585 aaKnown RBP23.52■■□□□ 1.36
HMGA1-203ENST00000374116 ABCA10Q8WWZ4 1543 aa23.51■■□□□ 1.35
HMGA1-203ENST00000374116 GAPVD1Q14C86 1478 aa23.41■■□□□ 1.34
HMGA1-203ENST00000374116 ABCA5Q8WWZ7 1642 aa23.4■■□□□ 1.34
HMGA1-203ENST00000374116 RUSC2Q8N2Y8 1516 aa23.38■■□□□ 1.33
HMGA1-203ENST00000374116 PBRM1Q86U86 1689 aa23.35■■□□□ 1.33
HMGA1-203ENST00000374116 GRIN2BQ13224 1484 aa23.32■■□□□ 1.32
HMGA1-203ENST00000374116 KIF27Q86VH2 1401 aa23.32■■□□□ 1.32
HMGA1-203ENST00000374116 SNAPC4Q5SXM2 1469 aa23.31■■□□□ 1.32
HMGA1-203ENST00000374116 FBLN2P98095 1184 aa23.29■■□□□ 1.32
HMGA1-203ENST00000374116 FAM9AQ8IZU1 332 aaPredicted RBP23.29■■□□□ 1.32
HMGA1-203ENST00000374116 IGF1RP08069 1367 aa23.23■■□□□ 1.31
HMGA1-203ENST00000374116 ERICH3Q5RHP9 1530 aa23.21■■□□□ 1.31
HMGA1-203ENST00000374116 MAGI1Q96QZ7 1491 aaPredicted RBP23.2■■□□□ 1.3
HMGA1-203ENST00000374116 CHMP7Q8WUX9 453 aaPredicted RBP23.18■■□□□ 1.3
HMGA1-203ENST00000374116 CHD1O14646 1710 aa23.18■■□□□ 1.3
HMGA1-203ENST00000374116 ADAMTS12P58397 1594 aa23.15■■□□□ 1.3
HMGA1-203ENST00000374116 SYNJ2O15056 1496 aa23.14■■□□□ 1.29
HMGA1-203ENST00000374116 FHAD1B1AJZ9 1412 aa23.11■■□□□ 1.29
HMGA1-203ENST00000374116 CARMIL1Q5VZK9 1371 aa23.09■■□□□ 1.29
HMGA1-203ENST00000374116 EHMT2Q96KQ7 1210 aa23.09■■□□□ 1.29
HMGA1-203ENST00000374116 CSRNP3Q8WYN3 585 aa23.08■■□□□ 1.29
HMGA1-203ENST00000374116 CUL7Q14999 1698 aa23.06■■□□□ 1.28
HMGA1-203ENST00000374116 OSCARQ8IYS5 282 aa23.06■■□□□ 1.28
HMGA1-203ENST00000374116 GRIN2AQ12879 1464 aa23.05■■□□□ 1.28
HMGA1-203ENST00000374116 EEA1Q15075 1411 aa23.02■■□□□ 1.28
HMGA1-203ENST00000374116 LOC105371045A0A1W2PR82 267 aa22.99■■□□□ 1.27
HMGA1-203ENST00000374116 PRXQ9BXM0 1461 aa22.97■■□□□ 1.27
HMGA1-203ENST00000374116 RAPGEF2Q9Y4G8 1499 aa22.97■■□□□ 1.27
HMGA1-203ENST00000374116 CEP170Q5SW79 1584 aa22.96■■□□□ 1.27
HMGA1-203ENST00000374116 NUP160Q12769 1436 aa22.9■■□□□ 1.26
HMGA1-203ENST00000374116 CLASP1Q7Z460 1538 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms