RNA–Protein interactions for RNA: ENST00000545621.5

HMBS-222, Transcript of hydroxymethylbilane synthase, human

TSL 1 (best)

Gene HMBS, Length 1,282 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMBS-222	ENST00000545621	NISCH	Q9Y2I1	1504 aa		39.11	■■■■□ 3.85
HMBS-222	ENST00000545621	CCDC180	Q9P1Z9	1646 aa		34.89	■■■■□ 3.18
HMBS-222	ENST00000545621	ABCC9	O60706	1549 aa		33.84	■■■■□ 3.01
HMBS-222	ENST00000545621	RB1CC1	Q8TDY2	1594 aa		32.7	■■■□□ 2.83
HMBS-222	ENST00000545621	NACAD	O15069	1562 aa		32.7	■■■□□ 2.82
HMBS-222	ENST00000545621	ZCCHC6	Q5VYS8	1495 aa	Known RBP	32.61	■■■□□ 2.81
HMBS-222	ENST00000545621	MYO15B	Q96JP2	1530 aa		32.57	■■■□□ 2.8
HMBS-222	ENST00000545621	DCAF1	Q9Y4B6	1507 aa		32.44	■■■□□ 2.78
HMBS-222	ENST00000545621	DCAF8L2	P0C7V8	631 aa		32.36	■■■□□ 2.77
HMBS-222	ENST00000545621	UNC13A	Q9UPW8	1703 aa		32.17	■■■□□ 2.74
HMBS-222	ENST00000545621	BICRA	Q9NZM4	1560 aa		31.77	■■■□□ 2.68
HMBS-222	ENST00000545621	SCRIB	Q14160	1630 aa		31.67	■■■□□ 2.66
HMBS-222	ENST00000545621	PABPN1	Q86U42	306 aa	Known RBP eCLIP	31.55	■■■□□ 2.64
HMBS-222	ENST00000545621	SHROOM4	Q9ULL8	1493 aa		31.44	■■■□□ 2.62
HMBS-222	ENST00000545621	DNAJC5B	Q9UF47	199 aa		31.01	■■■□□ 2.55
HMBS-222	ENST00000545621	EIF4G1	Q04637	1599 aa	Known RBP	30.88	■■■□□ 2.53
HMBS-222	ENST00000545621	CC2D2A	Q9P2K1	1620 aa		30.74	■■■□□ 2.51
HMBS-222	ENST00000545621	CECR2	Q9BXF3	1484 aa		30.43	■■■□□ 2.46
HMBS-222	ENST00000545621	SMARCA4	P51532	1647 aa		30.38	■■■□□ 2.45
HMBS-222	ENST00000545621	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.32	■■■□□ 2.44
HMBS-222	ENST00000545621	SMARCA2	P51531	1590 aa		30.14	■■■□□ 2.42
HMBS-222	ENST00000545621	PEG3	Q9GZU2	1588 aa		30.14	■■■□□ 2.42
HMBS-222	ENST00000545621	NCAPD3	P42695	1498 aa		30.13	■■■□□ 2.41
HMBS-222	ENST00000545621	ATAD2B	Q9ULI0	1458 aa		30.13	■■■□□ 2.41
HMBS-222	ENST00000545621	MROH2B	Q7Z745	1585 aa		30.12	■■■□□ 2.41
HMBS-222	ENST00000545621	HMGXB3	Q12766	1538 aa		30.04	■■■□□ 2.4
HMBS-222	ENST00000545621	BAZ1B	Q9UIG0	1483 aa	Known RBP	29.86	■■■□□ 2.37
HMBS-222	ENST00000545621	WIZ	O95785	1651 aa		29.85	■■■□□ 2.37
HMBS-222	ENST00000545621	RSF1	Q96T23	1441 aa	Predicted RBP	29.77	■■■□□ 2.36
HMBS-222	ENST00000545621	TOP2A	P11388	1531 aa	Known RBP	29.51	■■■□□ 2.32
HMBS-222	ENST00000545621	LAMC3	Q9Y6N6	1575 aa		29.38	■■■□□ 2.29
HMBS-222	ENST00000545621	NES	P48681	1621 aa		29.34	■■■□□ 2.29
HMBS-222	ENST00000545621	CADPS	Q9ULU8	1353 aa		29.2	■■■□□ 2.26
HMBS-222	ENST00000545621	KIF21A	Q7Z4S6	1674 aa		29.15	■■■□□ 2.26
HMBS-222	ENST00000545621	ERCC6	Q03468	1493 aa		29.14	■■■□□ 2.26
HMBS-222	ENST00000545621	PRDM2	Q13029	1718 aa		29.11	■■■□□ 2.25
HMBS-222	ENST00000545621	CCDC88B	A6NC98	1476 aa		29.1	■■■□□ 2.25
HMBS-222	ENST00000545621	CFTR	P13569	1480 aa		29.09	■■■□□ 2.25
HMBS-222	ENST00000545621	PDS5B	Q9NTI5	1447 aa		29.06	■■■□□ 2.24
HMBS-222	ENST00000545621	THOC2	Q8NI27	1593 aa	Known RBP	29.01	■■■□□ 2.24
HMBS-222	ENST00000545621	CUX2	O14529	1486 aa		28.93	■■■□□ 2.22
HMBS-222	ENST00000545621	FANCD2	Q9BXW9	1451 aa		28.87	■■■□□ 2.21
HMBS-222	ENST00000545621	SUPT5H	O00267	1087 aa	Known RBP	28.85	■■■□□ 2.21
HMBS-222	ENST00000545621	CEP164	Q9UPV0	1460 aa		28.84	■■■□□ 2.21
HMBS-222	ENST00000545621	MRC2	Q9UBG0	1479 aa		28.79	■■■□□ 2.2
HMBS-222	ENST00000545621	WDR62	O43379	1518 aa		28.77	■■■□□ 2.2
HMBS-222	ENST00000545621	URB2	Q14146	1524 aa	Known RBP	28.61	■■■□□ 2.17
HMBS-222	ENST00000545621	ABCC8	Q09428	1581 aa		28.46	■■■□□ 2.15
HMBS-222	ENST00000545621	DNMBP	Q6XZF7	1577 aa		28.45	■■■□□ 2.15
HMBS-222	ENST00000545621	TOPBP1	Q92547	1522 aa		28.45	■■■□□ 2.15
HMBS-222	ENST00000545621	CUX1	P39880	1505 aa		28.27	■■■□□ 2.12
HMBS-222	ENST00000545621	IFT140	Q96RY7	1462 aa		28.23	■■■□□ 2.11
HMBS-222	ENST00000545621	TARBP1	Q13395	1621 aa	Known RBP	28.22	■■■□□ 2.11
HMBS-222	ENST00000545621	POLA1	P09884	1462 aa	Predicted RBP	28.21	■■■□□ 2.11
HMBS-222	ENST00000545621	BIVM-ERCC5	R4GMW8	1640 aa		28.13	■■■□□ 2.09
HMBS-222	ENST00000545621	FGD5	Q6ZNL6	1462 aa		28.13	■■■□□ 2.09
HMBS-222	ENST00000545621	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.09	■■■□□ 2.09
HMBS-222	ENST00000545621	TOP2B	Q02880	1626 aa		28.08	■■■□□ 2.09
HMBS-222	ENST00000545621	WDR97	A6NE52	1622 aa		28.07	■■■□□ 2.08
HMBS-222	ENST00000545621	EIF4G3	O43432	1585 aa	Known RBP	28.07	■■■□□ 2.08
HMBS-222	ENST00000545621	SYNJ1	O43426	1573 aa		28.04	■■■□□ 2.08
HMBS-222	ENST00000545621	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.04	■■■□□ 2.08
HMBS-222	ENST00000545621	RAD54L2	Q9Y4B4	1467 aa		28.02	■■■□□ 2.08
HMBS-222	ENST00000545621	SOGA1	O94964	1423 aa		28.02	■■■□□ 2.08
HMBS-222	ENST00000545621	AQR	O60306	1485 aa	Known RBP eCLIP	27.9	■■■□□ 2.06	1e-8	■■■■■ 28.1
HMBS-222	ENST00000545621	DNAJC5	Q9H3Z4	198 aa		27.9	■■■□□ 2.06
HMBS-222	ENST00000545621	ABCA10	Q8WWZ4	1543 aa		27.9	■■■□□ 2.06
HMBS-222	ENST00000545621	ABCA5	Q8WWZ7	1642 aa		27.85	■■■□□ 2.05
HMBS-222	ENST00000545621	PBRM1	Q86U86	1689 aa		27.83	■■■□□ 2.05
HMBS-222	ENST00000545621	TDRD9	Q8NDG6	1382 aa	Known RBP	27.83	■■■□□ 2.05
HMBS-222	ENST00000545621	CHD1	O14646	1710 aa		27.77	■■■□□ 2.04
HMBS-222	ENST00000545621	GAPVD1	Q14C86	1478 aa		27.75	■■■□□ 2.03
HMBS-222	ENST00000545621	GRIN2B	Q13224	1484 aa		27.73	■■■□□ 2.03
HMBS-222	ENST00000545621	MAGI1	Q96QZ7	1491 aa	Predicted RBP	27.69	■■■□□ 2.02
HMBS-222	ENST00000545621	SNAPC4	Q5SXM2	1469 aa		27.68	■■■□□ 2.02
HMBS-222	ENST00000545621	OSCAR	Q8IYS5	282 aa		27.62	■■■□□ 2.01
HMBS-222	ENST00000545621	ERICH3	Q5RHP9	1530 aa		27.58	■■■□□ 2.01
HMBS-222	ENST00000545621	SYNJ2	O15056	1496 aa		27.56	■■■□□ 2
HMBS-222	ENST00000545621	ADAMTS12	P58397	1594 aa		27.54	■■■□□ 2
HMBS-222	ENST00000545621	KIF27	Q86VH2	1401 aa		27.44	■■□□□ 1.98
HMBS-222	ENST00000545621	FBLN2	P98095	1184 aa		27.42	■■□□□ 1.98
HMBS-222	ENST00000545621	CHMP7	Q8WUX9	453 aa	Predicted RBP	27.42	■■□□□ 1.98
HMBS-222	ENST00000545621	FHAD1	B1AJZ9	1412 aa		27.41	■■□□□ 1.98
HMBS-222	ENST00000545621	CLASP1	Q7Z460	1538 aa		27.41	■■□□□ 1.98
HMBS-222	ENST00000545621	GRIN2A	Q12879	1464 aa		27.39	■■□□□ 1.98
HMBS-222	ENST00000545621	CUL7	Q14999	1698 aa		27.38	■■□□□ 1.97
HMBS-222	ENST00000545621	IGF1R	P08069	1367 aa		27.33	■■□□□ 1.97
HMBS-222	ENST00000545621	RIMBP3C	A6NJZ7	1639 aa		27.32	■■□□□ 1.96
HMBS-222	ENST00000545621	RIMBP3B	A6NNM3	1639 aa		27.32	■■□□□ 1.96
HMBS-222	ENST00000545621	RIMBP3	Q9UFD9	1639 aa		27.32	■■□□□ 1.96
HMBS-222	ENST00000545621	NUP160	Q12769	1436 aa		27.3	■■□□□ 1.96
HMBS-222	ENST00000545621	CEP170	Q5SW79	1584 aa		27.3	■■□□□ 1.96
HMBS-222	ENST00000545621	TRIM41	Q8WV44	630 aa		27.28	■■□□□ 1.96
HMBS-222	ENST00000545621	ARHGEF11	O15085	1522 aa		27.27	■■□□□ 1.96
HMBS-222	ENST00000545621	RUSC2	Q8N2Y8	1516 aa		27.22	■■□□□ 1.95
HMBS-222	ENST00000545621	SHROOM2	Q13796	1616 aa		27.18	■■□□□ 1.94
HMBS-222	ENST00000545621	CARMIL1	Q5VZK9	1371 aa		27.14	■■□□□ 1.94
HMBS-222	ENST00000545621	ARAP1	Q96P48	1450 aa		27.06	■■□□□ 1.92
HMBS-222	ENST00000545621	CHIC1	Q5VXU3	224 aa		27.04	■■□□□ 1.92
HMBS-222	ENST00000545621	KIAA0586	Q9BVV6	1533 aa		27.02	■■□□□ 1.92

Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms