Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SSX3Q99909 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.59■□□□□ 0.89
SSX3Q99909 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC20.59■□□□□ 0.89
SSX3Q99909 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.59■□□□□ 0.89
SSX3Q99909 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SSX3Q99909 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SSX3Q99909 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SSX3Q99909 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SSX3Q99909 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SSX3Q99909 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SSX3Q99909 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SSX3Q99909 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SSX3Q99909 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.58■□□□□ 0.88
SSX3Q99909 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SSX3Q99909 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX3Q99909 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.57■□□□□ 0.88
SSX3Q99909 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX3Q99909 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.57■□□□□ 0.88
SSX3Q99909 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX3Q99909 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SSX3Q99909 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
SSX3Q99909 AC110285.7-201ENST00000624417 1536 ntBASIC20.57■□□□□ 0.88
SSX3Q99909 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SSX3Q99909 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SSX3Q99909 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SSX3Q99909 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC20.56■□□□□ 0.88
SSX3Q99909 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SSX3Q99909 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SSX3Q99909 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.56■□□□□ 0.88
SSX3Q99909 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SSX3Q99909 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX3Q99909 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.56■□□□□ 0.88
SSX3Q99909 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX3Q99909 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.55■□□□□ 0.88
SSX3Q99909 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SSX3Q99909 AP004833.2-201ENST00000532228 1454 ntBASIC20.55■□□□□ 0.88
SSX3Q99909 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
SSX3Q99909 AC008813.1-201ENST00000536597 885 ntBASIC20.54■□□□□ 0.88
SSX3Q99909 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SSX3Q99909 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC20.53■□□□□ 0.88
SSX3Q99909 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SSX3Q99909 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SSX3Q99909 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SSX3Q99909 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.53■□□□□ 0.88
SSX3Q99909 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SSX3Q99909 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SSX3Q99909 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SSX3Q99909 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SSX3Q99909 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SSX3Q99909 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SSX3Q99909 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SSX3Q99909 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SSX3Q99909 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SSX3Q99909 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SSX3Q99909 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SSX3Q99909 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
SSX3Q99909 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SSX3Q99909 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SSX3Q99909 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SSX3Q99909 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SSX3Q99909 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SSX3Q99909 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SSX3Q99909 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SSX3Q99909 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SSX3Q99909 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.5■□□□□ 0.87
SSX3Q99909 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SSX3Q99909 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SSX3Q99909 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
SSX3Q99909 ABHD17AP3-201ENST00000503096 1137 ntBASIC20.49■□□□□ 0.87
SSX3Q99909 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.49■□□□□ 0.87
SSX3Q99909 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.49■□□□□ 0.87
SSX3Q99909 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
SSX3Q99909 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SSX3Q99909 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
SSX3Q99909 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SSX3Q99909 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.48■□□□□ 0.87
SSX3Q99909 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SSX3Q99909 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.48■□□□□ 0.87
SSX3Q99909 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SSX3Q99909 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SSX3Q99909 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SSX3Q99909 AL139393.2-201ENST00000608721 2025 ntBASIC20.48■□□□□ 0.87
SSX3Q99909 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SSX3Q99909 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SSX3Q99909 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
SSX3Q99909 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
SSX3Q99909 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SSX3Q99909 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC20.46■□□□□ 0.87
SSX3Q99909 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SSX3Q99909 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SSX3Q99909 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SSX3Q99909 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SSX3Q99909 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SSX3Q99909 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.46■□□□□ 0.87
SSX3Q99909 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SSX3Q99909 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SSX3Q99909 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.46■□□□□ 0.87
SSX3Q99909 AC100797.4-201ENST00000631653 1827 ntBASIC20.46■□□□□ 0.87
SSX3Q99909 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
SSX3Q99909 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms