Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CPSF4O95639 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CPSF4O95639 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CPSF4O95639 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.61■■□□□ 1.37
CPSF4O95639 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CPSF4O95639 AC021231.2-201ENST00000594613 730 ntBASIC23.61■■□□□ 1.37
CPSF4O95639 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.6■■□□□ 1.37
CPSF4O95639 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.6■■□□□ 1.37
CPSF4O95639 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CPSF4O95639 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
CPSF4O95639 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CPSF4O95639 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CPSF4O95639 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
CPSF4O95639 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC23.6■■□□□ 1.37
CPSF4O95639 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
CPSF4O95639 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CPSF4O95639 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CPSF4O95639 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
CPSF4O95639 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CPSF4O95639 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC23.58■■□□□ 1.37
CPSF4O95639 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CPSF4O95639 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CPSF4O95639 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
CPSF4O95639 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CPSF4O95639 DUX4L29-201ENST00000425409 679 ntBASIC23.57■■□□□ 1.36
CPSF4O95639 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC23.57■■□□□ 1.36
CPSF4O95639 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
CPSF4O95639 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.57■■□□□ 1.36
CPSF4O95639 AL449106.1-201ENST00000608517 1980 ntBASIC23.56■■□□□ 1.36
CPSF4O95639 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CPSF4O95639 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CPSF4O95639 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.56■■□□□ 1.36
CPSF4O95639 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
CPSF4O95639 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.56■■□□□ 1.36
CPSF4O95639 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CPSF4O95639 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CPSF4O95639 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CPSF4O95639 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.55■■□□□ 1.36
CPSF4O95639 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.55■■□□□ 1.36
CPSF4O95639 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
CPSF4O95639 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CPSF4O95639 AC091060.1-201ENST00000623524 1766 ntBASIC23.54■■□□□ 1.36
CPSF4O95639 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.54■■□□□ 1.36
CPSF4O95639 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.53■■□□□ 1.36
CPSF4O95639 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CPSF4O95639 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.51■■□□□ 1.35
CPSF4O95639 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
CPSF4O95639 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
CPSF4O95639 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.5■■□□□ 1.35
CPSF4O95639 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.5■■□□□ 1.35
CPSF4O95639 AP004609.3-201ENST00000610705 1884 ntBASIC23.5■■□□□ 1.35
CPSF4O95639 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CPSF4O95639 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CPSF4O95639 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.48■■□□□ 1.35
CPSF4O95639 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CPSF4O95639 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CPSF4O95639 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.48■■□□□ 1.35
CPSF4O95639 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CPSF4O95639 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
CPSF4O95639 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.48■■□□□ 1.35
CPSF4O95639 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CPSF4O95639 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
CPSF4O95639 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.47■■□□□ 1.35
CPSF4O95639 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.46■■□□□ 1.35
CPSF4O95639 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
CPSF4O95639 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.45■■□□□ 1.34
CPSF4O95639 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.45■■□□□ 1.34
CPSF4O95639 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.45■■□□□ 1.34
CPSF4O95639 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CPSF4O95639 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC23.45■■□□□ 1.34
CPSF4O95639 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.45■■□□□ 1.34
CPSF4O95639 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CPSF4O95639 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.44■■□□□ 1.34
CPSF4O95639 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
CPSF4O95639 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
CPSF4O95639 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
CPSF4O95639 RPS2P35-201ENST00000443417 897 ntBASIC23.43■■□□□ 1.34
CPSF4O95639 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.43■■□□□ 1.34
CPSF4O95639 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.43■■□□□ 1.34
CPSF4O95639 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.43■■□□□ 1.34
CPSF4O95639 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.43■■□□□ 1.34
CPSF4O95639 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.43■■□□□ 1.34
CPSF4O95639 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
CPSF4O95639 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
CPSF4O95639 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.42■■□□□ 1.34
CPSF4O95639 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CPSF4O95639 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
CPSF4O95639 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CPSF4O95639 WHAMMP3-201ENST00000611636 1609 ntBASIC23.41■■□□□ 1.34
CPSF4O95639 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CPSF4O95639 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CPSF4O95639 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.4■■□□□ 1.34
CPSF4O95639 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CPSF4O95639 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CPSF4O95639 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.39■■□□□ 1.34
CPSF4O95639 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.39■■□□□ 1.33
CPSF4O95639 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CPSF4O95639 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CPSF4O95639 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.38■■□□□ 1.33
CPSF4O95639 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.38■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms