Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX6-3A6NJ46 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NKX6-3A6NJ46 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
NKX6-3A6NJ46 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
NKX6-3A6NJ46 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NKX6-3A6NJ46 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
NKX6-3A6NJ46 MIR219A2-201ENST00000608502 1504 ntBASIC20.9■□□□□ 0.94
NKX6-3A6NJ46 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX6-3A6NJ46 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.9■□□□□ 0.94
NKX6-3A6NJ46 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.89■□□□□ 0.93
NKX6-3A6NJ46 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX6-3A6NJ46 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX6-3A6NJ46 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX6-3A6NJ46 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NKX6-3A6NJ46 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NKX6-3A6NJ46 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NKX6-3A6NJ46 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
NKX6-3A6NJ46 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.87■□□□□ 0.93
NKX6-3A6NJ46 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NKX6-3A6NJ46 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NKX6-3A6NJ46 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
NKX6-3A6NJ46 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.86■□□□□ 0.93
NKX6-3A6NJ46 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NKX6-3A6NJ46 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
NKX6-3A6NJ46 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.85■□□□□ 0.93
NKX6-3A6NJ46 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC20.84■□□□□ 0.93
NKX6-3A6NJ46 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NKX6-3A6NJ46 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC20.84■□□□□ 0.93
NKX6-3A6NJ46 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NKX6-3A6NJ46 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NKX6-3A6NJ46 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NKX6-3A6NJ46 AC126177.7-201ENST00000547904 679 ntBASIC20.83■□□□□ 0.93
NKX6-3A6NJ46 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.83■□□□□ 0.93
NKX6-3A6NJ46 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
NKX6-3A6NJ46 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NKX6-3A6NJ46 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NKX6-3A6NJ46 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
NKX6-3A6NJ46 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NKX6-3A6NJ46 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.82■□□□□ 0.92
NKX6-3A6NJ46 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX6-3A6NJ46 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX6-3A6NJ46 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NKX6-3A6NJ46 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.82■□□□□ 0.92
NKX6-3A6NJ46 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX6-3A6NJ46 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX6-3A6NJ46 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.81■□□□□ 0.92
NKX6-3A6NJ46 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NKX6-3A6NJ46 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
NKX6-3A6NJ46 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX6-3A6NJ46 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
NKX6-3A6NJ46 MIR4449-201ENST00000578365 66 ntBASIC20.81■□□□□ 0.92
NKX6-3A6NJ46 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX6-3A6NJ46 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
NKX6-3A6NJ46 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NKX6-3A6NJ46 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.8■□□□□ 0.92
NKX6-3A6NJ46 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NKX6-3A6NJ46 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.8■□□□□ 0.92
NKX6-3A6NJ46 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX6-3A6NJ46 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX6-3A6NJ46 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.79■□□□□ 0.92
NKX6-3A6NJ46 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
NKX6-3A6NJ46 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NKX6-3A6NJ46 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.78■□□□□ 0.92
NKX6-3A6NJ46 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.78■□□□□ 0.92
NKX6-3A6NJ46 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
NKX6-3A6NJ46 WHAMMP3-201ENST00000611636 1609 ntBASIC20.77■□□□□ 0.92
NKX6-3A6NJ46 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NKX6-3A6NJ46 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NKX6-3A6NJ46 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NKX6-3A6NJ46 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NKX6-3A6NJ46 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NKX6-3A6NJ46 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX6-3A6NJ46 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.75■□□□□ 0.91
NKX6-3A6NJ46 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX6-3A6NJ46 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX6-3A6NJ46 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NKX6-3A6NJ46 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NKX6-3A6NJ46 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
NKX6-3A6NJ46 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NKX6-3A6NJ46 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
NKX6-3A6NJ46 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.74■□□□□ 0.91
NKX6-3A6NJ46 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NKX6-3A6NJ46 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
NKX6-3A6NJ46 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NKX6-3A6NJ46 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NKX6-3A6NJ46 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms