Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC26.33■■□□□ 1.81
PCDHA3Q9Y5H8 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA3Q9Y5H8 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC26.33■■□□□ 1.81
PCDHA3Q9Y5H8 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
PCDHA3Q9Y5H8 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
PCDHA3Q9Y5H8 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
PCDHA3Q9Y5H8 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.32■■□□□ 1.8
PCDHA3Q9Y5H8 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PCDHA3Q9Y5H8 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PCDHA3Q9Y5H8 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.31■■□□□ 1.8
PCDHA3Q9Y5H8 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
PCDHA3Q9Y5H8 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHA3Q9Y5H8 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC26.3■■□□□ 1.8
PCDHA3Q9Y5H8 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC26.3■■□□□ 1.8
PCDHA3Q9Y5H8 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHA3Q9Y5H8 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC26.3■■□□□ 1.8
PCDHA3Q9Y5H8 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
PCDHA3Q9Y5H8 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHA3Q9Y5H8 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.3■■□□□ 1.8
PCDHA3Q9Y5H8 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC26.3■■□□□ 1.8
PCDHA3Q9Y5H8 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHA3Q9Y5H8 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHA3Q9Y5H8 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
PCDHA3Q9Y5H8 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHA3Q9Y5H8 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC26.27■■□□□ 1.8
PCDHA3Q9Y5H8 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHA3Q9Y5H8 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHA3Q9Y5H8 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA3Q9Y5H8 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHA3Q9Y5H8 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC26.26■■□□□ 1.79
PCDHA3Q9Y5H8 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC26.26■■□□□ 1.79
PCDHA3Q9Y5H8 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
PCDHA3Q9Y5H8 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
PCDHA3Q9Y5H8 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PCDHA3Q9Y5H8 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
PCDHA3Q9Y5H8 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
PCDHA3Q9Y5H8 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA3Q9Y5H8 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
PCDHA3Q9Y5H8 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHA3Q9Y5H8 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC26.24■■□□□ 1.79
PCDHA3Q9Y5H8 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.24■■□□□ 1.79
PCDHA3Q9Y5H8 AL162393.1-201ENST00000437852 946 ntBASIC26.24■■□□□ 1.79
PCDHA3Q9Y5H8 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC26.24■■□□□ 1.79
PCDHA3Q9Y5H8 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PCDHA3Q9Y5H8 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.23■■□□□ 1.79
PCDHA3Q9Y5H8 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
PCDHA3Q9Y5H8 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
PCDHA3Q9Y5H8 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
PCDHA3Q9Y5H8 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
PCDHA3Q9Y5H8 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PCDHA3Q9Y5H8 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
PCDHA3Q9Y5H8 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC26.21■■□□□ 1.79
PCDHA3Q9Y5H8 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC26.21■■□□□ 1.79
PCDHA3Q9Y5H8 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHA3Q9Y5H8 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC26.21■■□□□ 1.79
PCDHA3Q9Y5H8 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
PCDHA3Q9Y5H8 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.79
PCDHA3Q9Y5H8 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PCDHA3Q9Y5H8 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
PCDHA3Q9Y5H8 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
PCDHA3Q9Y5H8 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC26.2■■□□□ 1.78
PCDHA3Q9Y5H8 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PCDHA3Q9Y5H8 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.19■■□□□ 1.78
PCDHA3Q9Y5H8 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
PCDHA3Q9Y5H8 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
PCDHA3Q9Y5H8 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.18■■□□□ 1.78
PCDHA3Q9Y5H8 AC044849.2-201ENST00000606596 710 ntBASIC26.18■■□□□ 1.78
PCDHA3Q9Y5H8 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
PCDHA3Q9Y5H8 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26.17■■□□□ 1.78
PCDHA3Q9Y5H8 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
PCDHA3Q9Y5H8 PEX7-203ENST00000541292 945 ntTSL 5 BASIC26.16■■□□□ 1.78
PCDHA3Q9Y5H8 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
PCDHA3Q9Y5H8 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC26.16■■□□□ 1.78
PCDHA3Q9Y5H8 AC091060.1-201ENST00000623524 1766 ntBASIC26.15■■□□□ 1.78
PCDHA3Q9Y5H8 AC110285.7-201ENST00000624417 1536 ntBASIC26.15■■□□□ 1.78
PCDHA3Q9Y5H8 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PCDHA3Q9Y5H8 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC26.15■■□□□ 1.78
PCDHA3Q9Y5H8 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
PCDHA3Q9Y5H8 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
PCDHA3Q9Y5H8 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC26.14■■□□□ 1.78
PCDHA3Q9Y5H8 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC26.14■■□□□ 1.77
PCDHA3Q9Y5H8 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PCDHA3Q9Y5H8 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.13■■□□□ 1.77
PCDHA3Q9Y5H8 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PCDHA3Q9Y5H8 AL449106.1-201ENST00000608517 1980 ntBASIC26.13■■□□□ 1.77
PCDHA3Q9Y5H8 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PCDHA3Q9Y5H8 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
PCDHA3Q9Y5H8 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
PCDHA3Q9Y5H8 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHA3Q9Y5H8 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHA3Q9Y5H8 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.11■■□□□ 1.77
PCDHA3Q9Y5H8 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
PCDHA3Q9Y5H8 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
PCDHA3Q9Y5H8 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
PCDHA3Q9Y5H8 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
PCDHA3Q9Y5H8 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
PCDHA3Q9Y5H8 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.09■■□□□ 1.77
PCDHA3Q9Y5H8 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA3Q9Y5H8 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHA3Q9Y5H8 AC135731.1-201ENST00000569415 2548 ntBASIC26.08■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms