Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.63■■□□□ 1.53
PTCHD3Q3KNS1 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PTCHD3Q3KNS1 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PTCHD3Q3KNS1 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PTCHD3Q3KNS1 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PTCHD3Q3KNS1 CHML-204ENST00000638121 920 ntTSL 2 BASIC24.61■■□□□ 1.53
PTCHD3Q3KNS1 LINC01003-201ENST00000564834 1764 ntBASIC24.61■■□□□ 1.53
PTCHD3Q3KNS1 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC24.61■■□□□ 1.53
PTCHD3Q3KNS1 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
PTCHD3Q3KNS1 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
PTCHD3Q3KNS1 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
PTCHD3Q3KNS1 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC24.6■■□□□ 1.53
PTCHD3Q3KNS1 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
PTCHD3Q3KNS1 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
PTCHD3Q3KNS1 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
PTCHD3Q3KNS1 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PTCHD3Q3KNS1 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
PTCHD3Q3KNS1 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
PTCHD3Q3KNS1 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
PTCHD3Q3KNS1 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
PTCHD3Q3KNS1 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.58■■□□□ 1.53
PTCHD3Q3KNS1 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
PTCHD3Q3KNS1 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
PTCHD3Q3KNS1 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
PTCHD3Q3KNS1 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
PTCHD3Q3KNS1 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
PTCHD3Q3KNS1 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PTCHD3Q3KNS1 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
PTCHD3Q3KNS1 AC110285.7-201ENST00000624417 1536 ntBASIC24.56■■□□□ 1.52
PTCHD3Q3KNS1 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
PTCHD3Q3KNS1 HES6-205ENST00000409356 528 ntTSL 2 BASIC24.56■■□□□ 1.52
PTCHD3Q3KNS1 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PTCHD3Q3KNS1 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC24.55■■□□□ 1.52
PTCHD3Q3KNS1 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC24.54■■□□□ 1.52
PTCHD3Q3KNS1 METRNL-202ENST00000570778 967 ntTSL 5 BASIC24.54■■□□□ 1.52
PTCHD3Q3KNS1 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
PTCHD3Q3KNS1 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
PTCHD3Q3KNS1 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PTCHD3Q3KNS1 AC018358.1-201ENST00000631079 1402 ntBASIC24.52■■□□□ 1.52
PTCHD3Q3KNS1 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
PTCHD3Q3KNS1 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PTCHD3Q3KNS1 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PTCHD3Q3KNS1 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PTCHD3Q3KNS1 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
PTCHD3Q3KNS1 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCHD3Q3KNS1 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCHD3Q3KNS1 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCHD3Q3KNS1 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTCHD3Q3KNS1 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTCHD3Q3KNS1 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTCHD3Q3KNS1 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.49■■□□□ 1.51
PTCHD3Q3KNS1 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.49■■□□□ 1.51
PTCHD3Q3KNS1 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
PTCHD3Q3KNS1 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTCHD3Q3KNS1 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTCHD3Q3KNS1 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCHD3Q3KNS1 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCHD3Q3KNS1 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCHD3Q3KNS1 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC24.48■■□□□ 1.51
PTCHD3Q3KNS1 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PTCHD3Q3KNS1 SHF-208ENST00000560734 1731 ntTSL 3 BASIC24.47■■□□□ 1.51
PTCHD3Q3KNS1 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.47■■□□□ 1.51
PTCHD3Q3KNS1 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PTCHD3Q3KNS1 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC24.47■■□□□ 1.51
PTCHD3Q3KNS1 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
PTCHD3Q3KNS1 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PTCHD3Q3KNS1 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC24.46■■□□□ 1.51
PTCHD3Q3KNS1 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
PTCHD3Q3KNS1 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
PTCHD3Q3KNS1 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC24.45■■□□□ 1.5
PTCHD3Q3KNS1 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PTCHD3Q3KNS1 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
PTCHD3Q3KNS1 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
PTCHD3Q3KNS1 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PTCHD3Q3KNS1 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC24.43■■□□□ 1.5
PTCHD3Q3KNS1 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PTCHD3Q3KNS1 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
PTCHD3Q3KNS1 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PTCHD3Q3KNS1 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
PTCHD3Q3KNS1 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
PTCHD3Q3KNS1 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PTCHD3Q3KNS1 AL121749.1-202ENST00000609313 2153 ntBASIC24.42■■□□□ 1.5
PTCHD3Q3KNS1 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
PTCHD3Q3KNS1 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
PTCHD3Q3KNS1 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
PTCHD3Q3KNS1 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC24.41■■□□□ 1.5
PTCHD3Q3KNS1 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
PTCHD3Q3KNS1 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
PTCHD3Q3KNS1 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
PTCHD3Q3KNS1 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
PTCHD3Q3KNS1 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PTCHD3Q3KNS1 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC24.4■■□□□ 1.5
PTCHD3Q3KNS1 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
PTCHD3Q3KNS1 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC24.4■■□□□ 1.5
PTCHD3Q3KNS1 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.4■■□□□ 1.5
PTCHD3Q3KNS1 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
PTCHD3Q3KNS1 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PTCHD3Q3KNS1 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
PTCHD3Q3KNS1 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
PTCHD3Q3KNS1 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms