Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.24■□□□□ 0.99
USF1P22415 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.24■□□□□ 0.99
USF1P22415 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USF1P22415 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USF1P22415 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USF1P22415 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.23■□□□□ 0.99
USF1P22415 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USF1P22415 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USF1P22415 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.23■□□□□ 0.99
USF1P22415 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USF1P22415 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USF1P22415 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
USF1P22415 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
USF1P22415 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USF1P22415 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USF1P22415 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.22■□□□□ 0.99
USF1P22415 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USF1P22415 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
USF1P22415 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
USF1P22415 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
USF1P22415 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USF1P22415 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USF1P22415 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USF1P22415 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.21■□□□□ 0.99
USF1P22415 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USF1P22415 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.21■□□□□ 0.99
USF1P22415 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
USF1P22415 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USF1P22415 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
USF1P22415 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USF1P22415 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.2■□□□□ 0.98
USF1P22415 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
USF1P22415 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USF1P22415 AC126177.7-201ENST00000547904 679 ntBASIC21.19■□□□□ 0.98
USF1P22415 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USF1P22415 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.19■□□□□ 0.98
USF1P22415 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
USF1P22415 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.18■□□□□ 0.98
USF1P22415 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USF1P22415 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USF1P22415 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USF1P22415 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USF1P22415 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USF1P22415 U85056.1-201ENST00000616429 682 ntBASIC21.17■□□□□ 0.98
USF1P22415 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
USF1P22415 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USF1P22415 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USF1P22415 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USF1P22415 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
USF1P22415 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USF1P22415 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USF1P22415 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
USF1P22415 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USF1P22415 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
USF1P22415 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USF1P22415 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USF1P22415 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.15■□□□□ 0.98
USF1P22415 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
USF1P22415 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
USF1P22415 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USF1P22415 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.15■□□□□ 0.98
USF1P22415 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USF1P22415 AL033527.3-201ENST00000566366 1196 ntBASIC21.15■□□□□ 0.98
USF1P22415 AC092296.2-201ENST00000589470 999 ntBASIC21.15■□□□□ 0.98
USF1P22415 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USF1P22415 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USF1P22415 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.14■□□□□ 0.97
USF1P22415 AC139426.1-201ENST00000568218 2529 ntBASIC21.14■□□□□ 0.97
USF1P22415 AC018358.1-201ENST00000631079 1402 ntBASIC21.13■□□□□ 0.97
USF1P22415 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
USF1P22415 ECEL1P2-201ENST00000461596 1295 ntBASIC21.13■□□□□ 0.97
USF1P22415 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USF1P22415 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USF1P22415 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.12■□□□□ 0.97
USF1P22415 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
USF1P22415 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.12■□□□□ 0.97
USF1P22415 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USF1P22415 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.12■□□□□ 0.97
USF1P22415 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.11■□□□□ 0.97
USF1P22415 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
USF1P22415 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.11■□□□□ 0.97
USF1P22415 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USF1P22415 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.11■□□□□ 0.97
USF1P22415 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USF1P22415 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
USF1P22415 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USF1P22415 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
USF1P22415 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USF1P22415 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
USF1P22415 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USF1P22415 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.09■□□□□ 0.97
USF1P22415 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.08■□□□□ 0.97
USF1P22415 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
USF1P22415 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USF1P22415 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USF1P22415 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
USF1P22415 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USF1P22415 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USF1P22415 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USF1P22415 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms