Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DUX4L21-201ENST00000622058 1269 ntBASIC29.79■■■□□ 2.36
HMGB1P09429 DUX4L10-201ENST00000622460 1267 ntBASIC29.79■■■□□ 2.36
HMGB1P09429 DUX4L25-201ENST00000624915 1269 ntBASIC29.79■■■□□ 2.36
HMGB1P09429 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
HMGB1P09429 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
HMGB1P09429 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC29.78■■■□□ 2.36
HMGB1P09429 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC29.78■■■□□ 2.36
HMGB1P09429 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC29.78■■■□□ 2.36
HMGB1P09429 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC29.78■■■□□ 2.36
HMGB1P09429 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
HMGB1P09429 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
HMGB1P09429 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC29.77■■■□□ 2.36
HMGB1P09429 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC29.77■■■□□ 2.36
HMGB1P09429 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC29.76■■■□□ 2.36
HMGB1P09429 DUX4L11-201ENST00000611504 1267 ntBASIC29.76■■■□□ 2.35
HMGB1P09429 DUX4L12-201ENST00000614593 1267 ntBASIC29.76■■■□□ 2.35
HMGB1P09429 DUX4L14-201ENST00000621227 1267 ntBASIC29.76■■■□□ 2.35
HMGB1P09429 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC29.75■■■□□ 2.35
HMGB1P09429 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
HMGB1P09429 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
HMGB1P09429 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
HMGB1P09429 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
HMGB1P09429 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
HMGB1P09429 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
HMGB1P09429 ABHD17AP4-201ENST00000411545 909 ntBASIC29.74■■■□□ 2.35
HMGB1P09429 RPS2-210ENST00000530225 765 ntTSL 2 BASIC29.74■■■□□ 2.35
HMGB1P09429 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC29.74■■■□□ 2.35
HMGB1P09429 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC29.74■■■□□ 2.35
HMGB1P09429 AL121749.1-202ENST00000609313 2153 ntBASIC29.73■■■□□ 2.35
HMGB1P09429 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC29.72■■■□□ 2.35
HMGB1P09429 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC29.72■■■□□ 2.35
HMGB1P09429 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
HMGB1P09429 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
HMGB1P09429 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
HMGB1P09429 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC29.71■■■□□ 2.35
HMGB1P09429 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
HMGB1P09429 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
HMGB1P09429 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
HMGB1P09429 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
HMGB1P09429 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
HMGB1P09429 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC29.69■■■□□ 2.34
HMGB1P09429 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC29.69■■■□□ 2.34
HMGB1P09429 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
HMGB1P09429 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
HMGB1P09429 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
HMGB1P09429 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC29.68■■■□□ 2.34
HMGB1P09429 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.67■■■□□ 2.34
HMGB1P09429 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
HMGB1P09429 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC29.66■■■□□ 2.34
HMGB1P09429 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
HMGB1P09429 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
HMGB1P09429 AGPS-202ENST00000409888 815 ntTSL 4 BASIC29.65■■■□□ 2.34
HMGB1P09429 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC29.65■■■□□ 2.34
HMGB1P09429 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC29.65■■■□□ 2.34
HMGB1P09429 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC29.65■■■□□ 2.34
HMGB1P09429 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC29.65■■■□□ 2.34
HMGB1P09429 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC29.64■■■□□ 2.34
HMGB1P09429 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
HMGB1P09429 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
HMGB1P09429 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
HMGB1P09429 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC29.62■■■□□ 2.33
HMGB1P09429 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC29.62■■■□□ 2.33
HMGB1P09429 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC29.62■■■□□ 2.33
HMGB1P09429 AC008813.1-201ENST00000536597 885 ntBASIC29.62■■■□□ 2.33
HMGB1P09429 CHST11-202ENST00000546689 756 ntTSL 2 BASIC29.62■■■□□ 2.33
HMGB1P09429 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
HMGB1P09429 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
HMGB1P09429 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
HMGB1P09429 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
HMGB1P09429 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC29.61■■■□□ 2.33
HMGB1P09429 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC29.61■■■□□ 2.33
HMGB1P09429 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
HMGB1P09429 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC29.61■■■□□ 2.33
HMGB1P09429 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC29.61■■■□□ 2.33
HMGB1P09429 RNF166-209ENST00000567844 633 ntTSL 5 BASIC29.61■■■□□ 2.33
HMGB1P09429 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC29.6■■■□□ 2.33
HMGB1P09429 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
HMGB1P09429 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC29.6■■■□□ 2.33
HMGB1P09429 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC29.59■■■□□ 2.33
HMGB1P09429 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC29.59■■■□□ 2.33
HMGB1P09429 HES6-205ENST00000409356 528 ntTSL 2 BASIC29.59■■■□□ 2.33
HMGB1P09429 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
HMGB1P09429 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
HMGB1P09429 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC29.58■■■□□ 2.33
HMGB1P09429 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC29.58■■■□□ 2.33
HMGB1P09429 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC29.57■■■□□ 2.32
HMGB1P09429 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC29.57■■■□□ 2.32
HMGB1P09429 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
HMGB1P09429 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC29.57■■■□□ 2.32
HMGB1P09429 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC29.57■■■□□ 2.32
HMGB1P09429 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
HMGB1P09429 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
HMGB1P09429 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
HMGB1P09429 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC29.55■■■□□ 2.32
HMGB1P09429 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC29.54■■■□□ 2.32
HMGB1P09429 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC29.54■■■□□ 2.32
HMGB1P09429 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
HMGB1P09429 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC29.54■■■□□ 2.32
HMGB1P09429 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC29.53■■■□□ 2.32
HMGB1P09429 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms