Protein–RNA interactions for Protein: P03897

MT-ND3, NADH-ubiquinone oxidoreductase chain 3, humanhuman

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND3P03897 PVT1-219ENST00000523427 938 ntTSL 3 BASIC25.46■■□□□ 1.67
MT-ND3P03897 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC25.45■■□□□ 1.67
MT-ND3P03897 ZNRF2P2-203ENST00000454624 420 ntBASIC25.45■■□□□ 1.66
MT-ND3P03897 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.45■■□□□ 1.66
MT-ND3P03897 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
MT-ND3P03897 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
MT-ND3P03897 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MT-ND3P03897 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC25.44■■□□□ 1.66
MT-ND3P03897 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
MT-ND3P03897 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC25.43■■□□□ 1.66
MT-ND3P03897 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC25.43■■□□□ 1.66
MT-ND3P03897 AP002414.2-202ENST00000590929 1450 ntBASIC25.43■■□□□ 1.66
MT-ND3P03897 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
MT-ND3P03897 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
MT-ND3P03897 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
MT-ND3P03897 DUX4L29-201ENST00000425409 679 ntBASIC25.43■■□□□ 1.66
MT-ND3P03897 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
MT-ND3P03897 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.43■■□□□ 1.66
MT-ND3P03897 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
MT-ND3P03897 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MT-ND3P03897 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
MT-ND3P03897 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC25.41■■□□□ 1.66
MT-ND3P03897 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
MT-ND3P03897 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
MT-ND3P03897 HGH1-207ENST00000628266 258 ntTSL 5 BASIC25.41■■□□□ 1.66
MT-ND3P03897 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
MT-ND3P03897 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC25.4■■□□□ 1.66
MT-ND3P03897 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
MT-ND3P03897 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC25.39■■□□□ 1.66
MT-ND3P03897 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC25.39■■□□□ 1.66
MT-ND3P03897 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
MT-ND3P03897 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.65
MT-ND3P03897 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
MT-ND3P03897 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
MT-ND3P03897 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
MT-ND3P03897 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC25.38■■□□□ 1.65
MT-ND3P03897 AC108673.1-201ENST00000510422 1159 ntBASIC25.38■■□□□ 1.65
MT-ND3P03897 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MT-ND3P03897 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
MT-ND3P03897 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MT-ND3P03897 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.37■■□□□ 1.65
MT-ND3P03897 AL449106.1-201ENST00000608517 1980 ntBASIC25.36■■□□□ 1.65
MT-ND3P03897 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC25.36■■□□□ 1.65
MT-ND3P03897 CIB2-204ENST00000557846 934 ntTSL 3 BASIC25.36■■□□□ 1.65
MT-ND3P03897 AC135731.1-201ENST00000569415 2548 ntBASIC25.35■■□□□ 1.65
MT-ND3P03897 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
MT-ND3P03897 HLA-V-202ENST00000446817 847 ntBASIC25.35■■□□□ 1.65
MT-ND3P03897 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
MT-ND3P03897 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC25.35■■□□□ 1.65
MT-ND3P03897 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
MT-ND3P03897 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
MT-ND3P03897 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
MT-ND3P03897 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
MT-ND3P03897 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.34■■□□□ 1.65
MT-ND3P03897 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
MT-ND3P03897 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
MT-ND3P03897 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.33■■□□□ 1.65
MT-ND3P03897 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
MT-ND3P03897 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
MT-ND3P03897 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
MT-ND3P03897 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC25.32■■□□□ 1.64
MT-ND3P03897 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
MT-ND3P03897 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC25.31■■□□□ 1.64
MT-ND3P03897 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
MT-ND3P03897 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
MT-ND3P03897 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC25.3■■□□□ 1.64
MT-ND3P03897 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC25.3■■□□□ 1.64
MT-ND3P03897 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
MT-ND3P03897 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
MT-ND3P03897 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.29■■□□□ 1.64
MT-ND3P03897 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
MT-ND3P03897 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
MT-ND3P03897 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
MT-ND3P03897 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MT-ND3P03897 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
MT-ND3P03897 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.28■■□□□ 1.64
MT-ND3P03897 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MT-ND3P03897 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MT-ND3P03897 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC25.28■■□□□ 1.64
MT-ND3P03897 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
MT-ND3P03897 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MT-ND3P03897 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
MT-ND3P03897 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
MT-ND3P03897 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
MT-ND3P03897 AC021231.2-201ENST00000594613 730 ntBASIC25.27■■□□□ 1.64
MT-ND3P03897 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
MT-ND3P03897 MEST-211ENST00000437945 1455 ntTSL 5 BASIC25.27■■□□□ 1.64
MT-ND3P03897 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC25.26■■□□□ 1.63
MT-ND3P03897 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
MT-ND3P03897 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
MT-ND3P03897 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
MT-ND3P03897 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC25.26■■□□□ 1.63
MT-ND3P03897 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
MT-ND3P03897 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
MT-ND3P03897 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
MT-ND3P03897 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.25■■□□□ 1.63
MT-ND3P03897 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.24■■□□□ 1.63
MT-ND3P03897 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
MT-ND3P03897 AC091060.1-201ENST00000623524 1766 ntBASIC25.24■■□□□ 1.63
MT-ND3P03897 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms