Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
COL4A1P02462 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC31.41■■■□□ 2.62
COL4A1P02462 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
COL4A1P02462 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
COL4A1P02462 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
COL4A1P02462 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC31.39■■■□□ 2.62
COL4A1P02462 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
COL4A1P02462 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC31.38■■■□□ 2.61
COL4A1P02462 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
COL4A1P02462 AL033527.3-201ENST00000566366 1196 ntBASIC31.38■■■□□ 2.61
COL4A1P02462 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
COL4A1P02462 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
COL4A1P02462 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.35■■■□□ 2.61
COL4A1P02462 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
COL4A1P02462 AP004833.2-201ENST00000532228 1454 ntBASIC31.34■■■□□ 2.61
COL4A1P02462 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
COL4A1P02462 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
COL4A1P02462 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC31.33■■■□□ 2.61
COL4A1P02462 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.61
COL4A1P02462 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
COL4A1P02462 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
COL4A1P02462 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
COL4A1P02462 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC31.3■■■□□ 2.6
COL4A1P02462 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC31.3■■■□□ 2.6
COL4A1P02462 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC31.3■■■□□ 2.6
COL4A1P02462 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL4A1P02462 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL4A1P02462 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
COL4A1P02462 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC31.29■■■□□ 2.6
COL4A1P02462 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC31.29■■■□□ 2.6
COL4A1P02462 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC31.29■■■□□ 2.6
COL4A1P02462 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL4A1P02462 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
COL4A1P02462 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC31.28■■■□□ 2.6
COL4A1P02462 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC31.28■■■□□ 2.6
COL4A1P02462 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL4A1P02462 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL4A1P02462 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
COL4A1P02462 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.6
COL4A1P02462 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC31.26■■■□□ 2.6
COL4A1P02462 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC31.26■■■□□ 2.6
COL4A1P02462 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC31.26■■■□□ 2.6
COL4A1P02462 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
COL4A1P02462 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC31.26■■■□□ 2.59
COL4A1P02462 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC31.26■■■□□ 2.59
COL4A1P02462 AL139393.2-201ENST00000608721 2025 ntBASIC31.26■■■□□ 2.59
COL4A1P02462 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC31.25■■■□□ 2.59
COL4A1P02462 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC31.25■■■□□ 2.59
COL4A1P02462 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
COL4A1P02462 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
COL4A1P02462 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC31.25■■■□□ 2.59
COL4A1P02462 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL4A1P02462 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
COL4A1P02462 ECEL1P2-201ENST00000461596 1295 ntBASIC31.24■■■□□ 2.59
COL4A1P02462 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL4A1P02462 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC31.23■■■□□ 2.59
COL4A1P02462 ABCB10P3-201ENST00000561950 2166 ntBASIC31.23■■■□□ 2.59
COL4A1P02462 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
COL4A1P02462 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
COL4A1P02462 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
COL4A1P02462 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
COL4A1P02462 AC004987.1-201ENST00000428627 508 ntBASIC31.22■■■□□ 2.59
COL4A1P02462 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC31.22■■■□□ 2.59
COL4A1P02462 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
COL4A1P02462 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL4A1P02462 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL4A1P02462 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC31.2■■■□□ 2.59
COL4A1P02462 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
COL4A1P02462 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC31.19■■■□□ 2.58
COL4A1P02462 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC31.18■■■□□ 2.58
COL4A1P02462 AC007029.1-201ENST00000604183 313 ntBASIC31.18■■■□□ 2.58
COL4A1P02462 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC31.18■■■□□ 2.58
COL4A1P02462 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC31.18■■■□□ 2.58
COL4A1P02462 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL4A1P02462 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL4A1P02462 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC31.17■■■□□ 2.58
COL4A1P02462 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL4A1P02462 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
COL4A1P02462 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
COL4A1P02462 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
COL4A1P02462 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
COL4A1P02462 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
COL4A1P02462 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC31.16■■■□□ 2.58
COL4A1P02462 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL4A1P02462 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
COL4A1P02462 ABCB10P1-201ENST00000614297 2181 ntBASIC31.15■■■□□ 2.58
COL4A1P02462 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
COL4A1P02462 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC31.14■■■□□ 2.58
COL4A1P02462 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC31.14■■■□□ 2.58
COL4A1P02462 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
COL4A1P02462 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
COL4A1P02462 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL4A1P02462 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC31.13■■■□□ 2.57
COL4A1P02462 AC009831.1-201ENST00000580420 1582 ntBASIC31.13■■■□□ 2.57
COL4A1P02462 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL4A1P02462 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL4A1P02462 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC31.13■■■□□ 2.57
COL4A1P02462 ATP5G2P3-201ENST00000429083 425 ntBASIC31.13■■■□□ 2.57
COL4A1P02462 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL4A1P02462 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms