RNA–Protein interactions for RNA: YPR002W

PDH1, Transcript of Putative 2-methylcitrate dehydratase, yeastyeast

Gene PDH1, Length 1,551 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PDH1YPR002W MTC1P47018 478 aaKnown RBP12.22□□□□□ -0.45
PDH1YPR002W DRS1P32892 752 aaKnown RBP12.02□□□□□ -0.49
PDH1YPR002W FAP1P53971 965 aa10.56□□□□□ -0.72
PDH1YPR002W BFR2Q06631 534 aaKnown RBP10.43□□□□□ -0.74
PDH1YPR002W DIP2Q12220 943 aaPredicted RBP10.21□□□□□ -0.78
PDH1YPR002W AVT3P36062 692 aa10.08□□□□□ -0.8
PDH1YPR002W PRI1P10363 409 aa10.07□□□□□ -0.8
PDH1YPR002W ISW2Q08773 1120 aa10.01□□□□□ -0.81
PDH1YPR002W AAD16Q02895 342 aa9.94□□□□□ -0.82
PDH1YPR002W RPG1P38249 964 aaKnown RBP9.92□□□□□ -0.82
PDH1YPR002W PRY3P47033 881 aa9.92□□□□□ -0.82
PDH1YPR002W TFA1P36100 482 aa9.84□□□□□ -0.83
PDH1YPR002W RSE1Q04693 1361 aaKnown RBP9.74□□□□□ -0.85
PDH1YPR002W TSR3Q12094 313 aaKnown RBP9.57□□□□□ -0.88
PDH1YPR002W RPL17AP05740 184 aaKnown RBP9.43□□□□□ -0.9
PDH1YPR002W RPL17BP46990 184 aaKnown RBP9.43□□□□□ -0.9
PDH1YPR002W YCK3P39962 524 aa9.42□□□□□ -0.9
PDH1YPR002W REB1P21538 810 aa9.33□□□□□ -0.92
PDH1YPR002W SGS1P35187 1447 aa9.28□□□□□ -0.92
PDH1YPR002W HAA1Q12753 694 aaKnown RBP9.27□□□□□ -0.93
PDH1YPR002W SPA2P23201 1466 aaKnown RBP9.19□□□□□ -0.94
PDH1YPR002W MRPL32P25348 183 aa9.14□□□□□ -0.95
PDH1YPR002W SPT21P35209 758 aa9.07□□□□□ -0.96
PDH1YPR002W INO80P53115 1489 aa9.06□□□□□ -0.96
PDH1YPR002W SSN2P38931 1420 aa9.05□□□□□ -0.96
PDH1YPR002W YKR023WP36119 530 aaKnown RBP8.87□□□□□ -0.99
PDH1YPR002W CDC27P38042 758 aa8.82□□□□□ -1
PDH1YPR002W RIM101P33400 625 aa8.81□□□□□ -1
PDH1YPR002W TCB3Q03640 1545 aaKnown RBP8.81□□□□□ -1
PDH1YPR002W TY1B-DR4Q07793 1604 aa8.76□□□□□ -1.01
PDH1YPR002W HOP09932 586 aa8.7□□□□□ -1.02
PDH1YPR002W DCD1P06773 312 aa8.69□□□□□ -1.02
PDH1YPR002W TFC8Q12308 588 aa8.68□□□□□ -1.02
PDH1YPR002W YGL015CP33199 130 aa8.63□□□□□ -1.03
PDH1YPR002W HSL1P34244 1518 aa8.62□□□□□ -1.03
PDH1YPR002W OXP1P28273 1286 aa8.55□□□□□ -1.04
PDH1YPR002W PTP3P40048 928 aa8.55□□□□□ -1.04
PDH1YPR002W SPT6P23615 1451 aaKnown RBP8.52□□□□□ -1.05
PDH1YPR002W MAP2P38174 421 aaKnown RBP8.48□□□□□ -1.05
PDH1YPR002W HIR3P47171 1648 aa8.47□□□□□ -1.05
PDH1YPR002W UBP10P53874 792 aaPredicted RBP8.46□□□□□ -1.06
PDH1YPR002W RQC2Q12532 1038 aaKnown RBP8.46□□□□□ -1.06
PDH1YPR002W SSP1P38871 571 aa8.45□□□□□ -1.06
PDH1YPR002W YIL055CP40523 627 aaKnown RBP8.44□□□□□ -1.06
PDH1YPR002W SKI3P17883 1432 aaKnown RBP8.43□□□□□ -1.06
PDH1YPR002W BCH2P36122 765 aa8.42□□□□□ -1.06
PDH1YPR002W YAH1Q12184 172 aaKnown RBP8.42□□□□□ -1.06
PDH1YPR002W XRN1P22147 1528 aaKnown RBP8.41□□□□□ -1.06
PDH1YPR002W MON2P48563 1636 aaPredicted RBP8.4□□□□□ -1.06
PDH1YPR002W SCY1P53009 804 aa8.38□□□□□ -1.07
PDH1YPR002W SIN3P22579 1536 aa8.37□□□□□ -1.07
PDH1YPR002W REV3P14284 1504 aa8.36□□□□□ -1.07
PDH1YPR002W SWR1Q05471 1514 aa8.35□□□□□ -1.07
PDH1YPR002W THO2P53552 1597 aaKnown RBP8.35□□□□□ -1.07
PDH1YPR002W CHD1P32657 1468 aa8.34□□□□□ -1.07
PDH1YPR002W ARP8Q12386 881 aaKnown RBP RIP-Chip data8.34□□□□□ -1.07not detected
PDH1YPR002W SSK2P53599 1579 aa8.32□□□□□ -1.08
PDH1YPR002W YLR271WQ06152 274 aa8.31□□□□□ -1.08
PDH1YPR002W RSM7P47150 247 aa8.29□□□□□ -1.08
PDH1YPR002W MMS22Q06164 1454 aa8.26□□□□□ -1.09
PDH1YPR002W EPS1P40557 701 aa8.24□□□□□ -1.09
PDH1YPR002W ESP1Q03018 1630 aa8.23□□□□□ -1.09
PDH1YPR002W SLX5P32828 619 aaKnown RBP8.22□□□□□ -1.09
PDH1YPR002W MYO2P19524 1574 aaKnown RBP8.2□□□□□ -1.1
PDH1YPR002W BDF1P35817 686 aa8.19□□□□□ -1.1
PDH1YPR002W AI2P03876 854 aa8.18□□□□□ -1.1
PDH1YPR002W MGA2P40578 1113 aa8.15□□□□□ -1.1
PDH1YPR002W POL1P13382 1468 aa8.13□□□□□ -1.11
PDH1YPR002W STU1P38198 1513 aa8.13□□□□□ -1.11
PDH1YPR002W TAF2P23255 1407 aa8.12□□□□□ -1.11
PDH1YPR002W DMA1P38823 416 aa8.12□□□□□ -1.11
PDH1YPR002W BBC1P47068 1157 aa8.12□□□□□ -1.11
PDH1YPR002W ATG2P53855 1592 aa8.09□□□□□ -1.11
PDH1YPR002W TIF4632P39936 914 aaKnown RBP8.09□□□□□ -1.11
PDH1YPR002W PSD2P53037 1138 aaKnown RBP8.08□□□□□ -1.12
PDH1YPR002W YPK9Q12697 1472 aa8.06□□□□□ -1.12
PDH1YPR002W CST9Q06032 482 aa8.05□□□□□ -1.12
PDH1YPR002W UFD4P33202 1483 aa8.04□□□□□ -1.12
PDH1YPR002W TGL3P40308 642 aa8.04□□□□□ -1.12
PDH1YPR002W ECM5Q03214 1411 aa8.03□□□□□ -1.12
PDH1YPR002W BPT1P14772 1559 aa8.03□□□□□ -1.12
PDH1YPR002W BUD4P47136 1447 aa8.03□□□□□ -1.12
PDH1YPR002W YTA7P40340 1379 aa8.02□□□□□ -1.13
PDH1YPR002W YOR1P53049 1477 aa7.98□□□□□ -1.13
PDH1YPR002W RKR1Q04781 1562 aa7.98□□□□□ -1.13
PDH1YPR002W TRM732Q03496 1420 aa7.97□□□□□ -1.13
PDH1YPR002W DNA2P38859 1522 aa7.97□□□□□ -1.13
PDH1YPR002W MYO4P32492 1471 aa7.97□□□□□ -1.13
PDH1YPR002W PEP1P32319 1579 aa7.97□□□□□ -1.13
PDH1YPR002W SCC2Q04002 1493 aa7.96□□□□□ -1.14
PDH1YPR002W KOG1P38873 1557 aa7.95□□□□□ -1.14
PDH1YPR002W NUP170P38181 1502 aa7.93□□□□□ -1.14
PDH1YPR002W RPO31P04051 1460 aa7.93□□□□□ -1.14
PDH1YPR002W MRM1P25270 412 aa7.92□□□□□ -1.14
PDH1YPR002W TY1B-DR3Q99231 1755 aa7.9□□□□□ -1.14
PDH1YPR002W TY2B-LR1P0C2J3 1770 aa7.9□□□□□ -1.15
PDH1YPR002W TY2B-FP0CX63 1770 aa7.9□□□□□ -1.15
PDH1YPR002W TY2B-GR2P0CX64 1770 aa7.9□□□□□ -1.15
PDH1YPR002W TY2B-CP25384 1770 aa7.9□□□□□ -1.15
PDH1YPR002W TY2B-DR2Q03494 1770 aa7.9□□□□□ -1.15
Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms