RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeastyeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB5YLR260W DRS1P32892 752 aaKnown RBP8.15□□□□□ -1.1
LCB5YLR260W MTC1P47018 478 aaKnown RBP8.07□□□□□ -1.12
LCB5YLR260W FAP1P53971 965 aa7.76□□□□□ -1.17
LCB5YLR260W PRY3P47033 881 aa7.36□□□□□ -1.23
LCB5YLR260W BFR2Q06631 534 aaKnown RBP7.08□□□□□ -1.28
LCB5YLR260W MON2P48563 1636 aaPredicted RBP7.01□□□□□ -1.29
LCB5YLR260W INO80P53115 1489 aa6.92□□□□□ -1.3
LCB5YLR260W DIP2Q12220 943 aaPredicted RBP6.92□□□□□ -1.3
LCB5YLR260W AVT3P36062 692 aa6.86□□□□□ -1.31
LCB5YLR260W HAA1Q12753 694 aaKnown RBP6.8□□□□□ -1.32
LCB5YLR260W AAD16Q02895 342 aa6.73□□□□□ -1.33
LCB5YLR260W TFA1P36100 482 aa6.71□□□□□ -1.34
LCB5YLR260W SWR1Q05471 1514 aa6.7□□□□□ -1.34
LCB5YLR260W YCK3P39962 524 aa6.7□□□□□ -1.34
LCB5YLR260W TY1B-DR4Q07793 1604 aa6.7□□□□□ -1.34
LCB5YLR260W PRI1P10363 409 aa6.7□□□□□ -1.34
LCB5YLR260W DNA2P38859 1522 aa6.66□□□□□ -1.34
LCB5YLR260W TCB3Q03640 1545 aaKnown RBP6.64□□□□□ -1.35
LCB5YLR260W SGS1P35187 1447 aa6.59□□□□□ -1.36
LCB5YLR260W ISW2Q08773 1120 aa6.53□□□□□ -1.36
LCB5YLR260W KOG1P38873 1557 aa6.53□□□□□ -1.36
LCB5YLR260W RSE1Q04693 1361 aaKnown RBP6.51□□□□□ -1.37
LCB5YLR260W RQC2Q12532 1038 aaKnown RBP6.49□□□□□ -1.37
LCB5YLR260W HSL1P34244 1518 aa6.46□□□□□ -1.38
LCB5YLR260W RPG1P38249 964 aaKnown RBP6.45□□□□□ -1.38
LCB5YLR260W BUD31P25337 157 aaPredicted RBP6.43□□□□□ -1.38
LCB5YLR260W SPT6P23615 1451 aaKnown RBP6.41□□□□□ -1.38
LCB5YLR260W TSR3Q12094 313 aaKnown RBP6.36□□□□□ -1.39
LCB5YLR260W TAF7Q05021 590 aa6.35□□□□□ -1.39
LCB5YLR260W HIR3P47171 1648 aa6.32□□□□□ -1.4
LCB5YLR260W SPA2P23201 1466 aaKnown RBP6.3□□□□□ -1.4
LCB5YLR260W RPL17AP05740 184 aaKnown RBP6.27□□□□□ -1.41
LCB5YLR260W RPL17BP46990 184 aaKnown RBP6.27□□□□□ -1.41
LCB5YLR260W ECM5Q03214 1411 aa6.23□□□□□ -1.41
LCB5YLR260W THO2P53552 1597 aaKnown RBP6.21□□□□□ -1.41
LCB5YLR260W XRN1P22147 1528 aaKnown RBP6.18□□□□□ -1.42
LCB5YLR260W BUD4P47136 1447 aa6.18□□□□□ -1.42
LCB5YLR260W REB1P21538 810 aa6.18□□□□□ -1.42
LCB5YLR260W MDS3P53094 1487 aa6.16□□□□□ -1.42
LCB5YLR260W PEP1P32319 1579 aa6.14□□□□□ -1.43
LCB5YLR260W SSN2P38931 1420 aa6.11□□□□□ -1.43
LCB5YLR260W ATG2P53855 1592 aa6.11□□□□□ -1.43
LCB5YLR260W REV3P14284 1504 aa6.09□□□□□ -1.43
LCB5YLR260W SPT21P35209 758 aa6.07□□□□□ -1.44
LCB5YLR260W MRPL32P25348 183 aa6.05□□□□□ -1.44
LCB5YLR260W SIN3P22579 1536 aa6.02□□□□□ -1.45
LCB5YLR260W SIS1P25294 352 aaKnown RBP6.01□□□□□ -1.45
LCB5YLR260W TAF2P23255 1407 aa5.99□□□□□ -1.45
LCB5YLR260W RIM101P33400 625 aa5.98□□□□□ -1.45
LCB5YLR260W BPT1P14772 1559 aa5.98□□□□□ -1.45
LCB5YLR260W SSK2P53599 1579 aa5.98□□□□□ -1.45
LCB5YLR260W ESP1Q03018 1630 aa5.96□□□□□ -1.46
LCB5YLR260W SKI3P17883 1432 aaKnown RBP5.94□□□□□ -1.46
LCB5YLR260W YGL015CP33199 130 aa5.94□□□□□ -1.46
LCB5YLR260W YCF1P39109 1515 aaKnown RBP5.87□□□□□ -1.47
LCB5YLR260W DMA1P38823 416 aa5.87□□□□□ -1.47
LCB5YLR260W SCC2Q04002 1493 aa5.85□□□□□ -1.47
LCB5YLR260W TY2B-LR1P0C2J3 1770 aa5.85□□□□□ -1.47
LCB5YLR260W TY2B-FP0CX63 1770 aa5.85□□□□□ -1.47
LCB5YLR260W TY2B-GR2P0CX64 1770 aa5.85□□□□□ -1.47
LCB5YLR260W TY2B-CP25384 1770 aa5.85□□□□□ -1.47
LCB5YLR260W TY2B-DR2Q03494 1770 aa5.85□□□□□ -1.47
LCB5YLR260W TY1B-DR1Q03855 1755 aa5.85□□□□□ -1.47
LCB5YLR260W TY2B-DR3Q07791 1770 aaKnown RBP5.85□□□□□ -1.47
LCB5YLR260W TY2B-OR1Q12113 1770 aa5.85□□□□□ -1.47
LCB5YLR260W TY2B-DR1Q12472 1770 aa5.85□□□□□ -1.47
LCB5YLR260W TY2B-OR2Q12501 1770 aa5.85□□□□□ -1.47
LCB5YLR260W YKR023WP36119 530 aaKnown RBP5.85□□□□□ -1.47
LCB5YLR260W UFD4P33202 1483 aa5.85□□□□□ -1.47
LCB5YLR260W YPK9Q12697 1472 aa5.83□□□□□ -1.48
LCB5YLR260W MYO2P19524 1574 aaKnown RBP5.82□□□□□ -1.48
LCB5YLR260W TY1B-BRQ12193 1756 aa5.82□□□□□ -1.48
LCB5YLR260W TY1B-GR3Q12316 1755 aa5.82□□□□□ -1.48
LCB5YLR260W TY1B-ORQ92393 1755 aa5.82□□□□□ -1.48
LCB5YLR260W OXP1P28273 1286 aa5.81□□□□□ -1.48
LCB5YLR260W PTP3P40048 928 aa5.81□□□□□ -1.48
LCB5YLR260W RPO31P04051 1460 aa5.8□□□□□ -1.48
LCB5YLR260W MIF2P35201 549 aa5.78□□□□□ -1.48
LCB5YLR260W CDC25P04821 1589 aa5.78□□□□□ -1.48
LCB5YLR260W TY2B-BQ12491 1770 aa5.78□□□□□ -1.48
LCB5YLR260W ESC1Q03661 1658 aaKnown RBP5.78□□□□□ -1.48
LCB5YLR260W TY1B-DR3Q99231 1755 aa5.77□□□□□ -1.49
LCB5YLR260W DNF1P32660 1571 aa5.77□□□□□ -1.49
LCB5YLR260W LEO1P38439 464 aa5.77□□□□□ -1.49
LCB5YLR260W TY1B-HO13535 1793 aa5.76□□□□□ -1.49
LCB5YLR260W TY1B-DR5P0C2I2 1755 aa5.76□□□□□ -1.49
LCB5YLR260W TY1B-DR6P0C2I3 1755 aa5.76□□□□□ -1.49
LCB5YLR260W TY1B-LR2P0C2I5 1755 aa5.76□□□□□ -1.49
LCB5YLR260W TY1B-LR3P0C2I6 1755 aaKnown RBP5.76□□□□□ -1.49
LCB5YLR260W TY1B-PR1P0C2I9 1755 aaKnown RBP5.76□□□□□ -1.49
LCB5YLR260W TY1B-PR2P0C2J0 1756 aa5.76□□□□□ -1.49
LCB5YLR260W TY1B-PR3P0C2J1 1755 aaKnown RBP5.76□□□□□ -1.49
LCB5YLR260W TY1B-JR1P47098 1755 aa5.76□□□□□ -1.49
LCB5YLR260W TY1B-ML2Q03434 1755 aaKnown RBP5.76□□□□□ -1.49
LCB5YLR260W TY1B-ER1Q03612 1755 aa5.76□□□□□ -1.49
LCB5YLR260W TY1B-ML1Q04711 1755 aaKnown RBP5.76□□□□□ -1.49
LCB5YLR260W TY1B-GR2Q12269 1755 aa5.76□□□□□ -1.49
LCB5YLR260W TY1B-OLQ12273 1755 aa5.76□□□□□ -1.49
LCB5YLR260W TY1B-PLQ12414 1755 aaKnown RBP5.76□□□□□ -1.49
LCB5YLR260W CHD1P32657 1468 aa5.74□□□□□ -1.49
Retrieved 100 of 5,963 RNA–protein pairs in 26.6 ms