Protein–RNA interactions for Protein: P0C2J1

TY1B-PR3, Transposon Ty1-PR3 Gag-Pol polyprotein, yeastyeast

Known RBP Predictions only

Length 1,755 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1B-PR3P0C2J1 YML009W-BYML009W-B 477 nt33.08■■■□□ 2.89
TY1B-PR3P0C2J1 NOP1YDL014W 984 nt31.69■■■□□ 2.66
TY1B-PR3P0C2J1 NSR1YGR159C 1245 nt31.43■■■□□ 2.62
TY1B-PR3P0C2J1 YKL036CYKL036C 393 nt30.47■■■□□ 2.47
TY1B-PR3P0C2J1 YJL027CYJL027C 417 nt28.56■■■□□ 2.16
TY1B-PR3P0C2J1 SCS3YGL126W 1143 nt28.44■■■□□ 2.14
TY1B-PR3P0C2J1 Q0297Q0297 156 nt28.32■■■□□ 2.12
TY1B-PR3P0C2J1 SRX1YKL086W 384 nt28.2■■■□□ 2.11
TY1B-PR3P0C2J1 MDJ1YFL016C 1536 nt27.88■■■□□ 2.05
TY1B-PR3P0C2J1 YCR051WYCR051W 669 nt26.88■■□□□ 1.89
TY1B-PR3P0C2J1 YOL085CYOL085C 342 nt26.2■■□□□ 1.78
TY1B-PR3P0C2J1 PKP1YIL042C 1185 nt26.17■■□□□ 1.78
TY1B-PR3P0C2J1 SCJ1YMR214W 1134 nt25.65■■□□□ 1.7
TY1B-PR3P0C2J1 RPP1BYDL130W 321 nt25.37■■□□□ 1.65
TY1B-PR3P0C2J1 ATS1YAL020C 1002 nt25.31■■□□□ 1.64
TY1B-PR3P0C2J1 TRN1tP(UGG)A 72 nt25.13■■□□□ 1.61
TY1B-PR3P0C2J1 SUF9tP(UGG)F 72 nt25.13■■□□□ 1.61
TY1B-PR3P0C2J1 SUF8tP(UGG)H 72 nt25.13■■□□□ 1.61
TY1B-PR3P0C2J1 tP(UGG)LtP(UGG)L 72 nt25.13■■□□□ 1.61
TY1B-PR3P0C2J1 SUF7tP(UGG)M 72 nt25.13■■□□□ 1.61
TY1B-PR3P0C2J1 tP(UGG)N1tP(UGG)N1 72 nt25.13■■□□□ 1.61
TY1B-PR3P0C2J1 tP(UGG)N2tP(UGG)N2 72 nt25.13■■□□□ 1.61
TY1B-PR3P0C2J1 tP(UGG)O1tP(UGG)O1 72 nt25.13■■□□□ 1.61
TY1B-PR3P0C2J1 SUF11tP(UGG)O2 72 nt25.13■■□□□ 1.61
TY1B-PR3P0C2J1 DBP2YNL112W 1641 nt24.86■■□□□ 1.57
TY1B-PR3P0C2J1 CCC1YLR220W 969 nt24.81■■□□□ 1.56
TY1B-PR3P0C2J1 PET122YER153C 765 nt24.5■■□□□ 1.51
TY1B-PR3P0C2J1 SCR1SCR1 522 nt24.13■■□□□ 1.45
TY1B-PR3P0C2J1 tP(UGG)O3tP(UGG)O3 72 nt23.89■■□□□ 1.42
TY1B-PR3P0C2J1 RTC3YHR087W 336 nt23.75■■□□□ 1.39
TY1B-PR3P0C2J1 RRN5YLR141W 1092 nt23.63■■□□□ 1.37
TY1B-PR3P0C2J1 RSB1YOR049C 1065 nt23.61■■□□□ 1.37
TY1B-PR3P0C2J1 PST2YDR032C 597 nt23.26■■□□□ 1.31
TY1B-PR3P0C2J1 RVS167YDR388W 1449 nt23.23■■□□□ 1.31
TY1B-PR3P0C2J1 YER088W-BYER088W-B 147 nt23.19■■□□□ 1.3
TY1B-PR3P0C2J1 YKL097CYKL097C 411 nt22.99■■□□□ 1.27
TY1B-PR3P0C2J1 YBR190WYBR190W 312 nt22.99■■□□□ 1.27
TY1B-PR3P0C2J1 YDJ1YNL064C 1230 nt22.84■■□□□ 1.25
TY1B-PR3P0C2J1 SHR5YOL110W 714 nt22.72■■□□□ 1.23
TY1B-PR3P0C2J1 GAR1YHR089C 618 nt22.5■■□□□ 1.19
TY1B-PR3P0C2J1 SHU1YHL006C 453 nt22.43■■□□□ 1.18
TY1B-PR3P0C2J1 DEP1YAL013W 1218 nt22.18■■□□□ 1.14
TY1B-PR3P0C2J1 YOR139CYOR139C 393 nt22.11■■□□□ 1.13
TY1B-PR3P0C2J1 YAL037C-BYAL037C-B 975 nt22.07■■□□□ 1.12
TY1B-PR3P0C2J1 URN1YPR152C 1398 nt21.78■■□□□ 1.08
TY1B-PR3P0C2J1 TIR1YER011W 765 nt21.62■■□□□ 1.05
TY1B-PR3P0C2J1 NPL3YDR432W 1245 nt21.55■■□□□ 1.04
TY1B-PR3P0C2J1 SRB2YHR041C 633 nt21.52■■□□□ 1.04
TY1B-PR3P0C2J1 MNP1YGL068W 585 nt21.48■■□□□ 1.03
TY1B-PR3P0C2J1 YNL208WYNL208W 600 nt21.38■■□□□ 1.01
TY1B-PR3P0C2J1 SSA1YAL005C 1929 nt21.31■■□□□ 1
TY1B-PR3P0C2J1 RPN10YHR200W 807 nt21.25■□□□□ 0.99
TY1B-PR3P0C2J1 WWM1YFL010C 636 nt21.1■□□□□ 0.97
TY1B-PR3P0C2J1 OPI9YLR338W 858 nt21.04■□□□□ 0.96
TY1B-PR3P0C2J1 HOM6YJR139C 1080 nt21.03■□□□□ 0.96
TY1B-PR3P0C2J1 YOL037CYOL037C 354 nt20.98■□□□□ 0.95
TY1B-PR3P0C2J1 SAH1YER043C 1350 nt20.96■□□□□ 0.95
TY1B-PR3P0C2J1 YJR120WYJR120W 351 nt20.94■□□□□ 0.94
TY1B-PR3P0C2J1 YGR021WYGR021W 873 nt20.87■□□□□ 0.93
TY1B-PR3P0C2J1 tM(CAU)CtM(CAU)C 72 nt20.81■□□□□ 0.92
TY1B-PR3P0C2J1 IMT4tM(CAU)E 72 nt20.81■□□□□ 0.92
TY1B-PR3P0C2J1 IMT3tM(CAU)J3 72 nt20.81■□□□□ 0.92
TY1B-PR3P0C2J1 IMT1tM(CAU)O1 72 nt20.81■□□□□ 0.92
TY1B-PR3P0C2J1 IMT2tM(CAU)P 72 nt20.81■□□□□ 0.92
TY1B-PR3P0C2J1 YJR018WYJR018W 363 nt20.68■□□□□ 0.9
TY1B-PR3P0C2J1 RKM5YLR137W 1104 nt20.64■□□□□ 0.89
TY1B-PR3P0C2J1 MOT3YMR070W 1473 nt20.55■□□□□ 0.88
TY1B-PR3P0C2J1 PUS2YGL063W 1113 nt20.53■□□□□ 0.88
TY1B-PR3P0C2J1 ARE1YCR048W 1833 nt20.47■□□□□ 0.87
TY1B-PR3P0C2J1 SSA3YBL075C 1950 nt20.47■□□□□ 0.87
TY1B-PR3P0C2J1 YFL021C-AYFL021C-A 855 nt20.44■□□□□ 0.86
TY1B-PR3P0C2J1 YHR049C-AYHR049C-A 297 nt20.44■□□□□ 0.86
TY1B-PR3P0C2J1 PUT4YOR348C 1884 nt20.41■□□□□ 0.86
TY1B-PR3P0C2J1 PUN1YLR414C 792 nt20.35■□□□□ 0.85
TY1B-PR3P0C2J1 YLR281CYLR281C 468 nt20.34■□□□□ 0.85
TY1B-PR3P0C2J1 RPP2BYDR382W 333 nt20.29■□□□□ 0.84
TY1B-PR3P0C2J1 BSC6YOL137W 1494 nt20.27■□□□□ 0.83
TY1B-PR3P0C2J1 WHI5YOR083W 888 nt20.26■□□□□ 0.83
TY1B-PR3P0C2J1 YLR236CYLR236C 324 nt20.23■□□□□ 0.83
TY1B-PR3P0C2J1 BDH2YAL061W 1254 nt20.21■□□□□ 0.83
TY1B-PR3P0C2J1 FMP45YDL222C 930 nt20.16■□□□□ 0.82
TY1B-PR3P0C2J1 YPR011CYPR011C 981 nt20.13■□□□□ 0.81
TY1B-PR3P0C2J1 PTC2YER089C 1395 nt20.04■□□□□ 0.8
TY1B-PR3P0C2J1 BUD23YCR047C 828 nt19.93■□□□□ 0.78
TY1B-PR3P0C2J1 POA1YBR022W 534 nt19.93■□□□□ 0.78
TY1B-PR3P0C2J1 DSK2YMR276W 1122 nt19.92■□□□□ 0.78
TY1B-PR3P0C2J1 YBL100CYBL100C 315 nt19.86■□□□□ 0.77
TY1B-PR3P0C2J1 FIS1YIL065C 468 nt19.85■□□□□ 0.77
TY1B-PR3P0C2J1 LPX1YOR084W 1164 nt19.78■□□□□ 0.76
TY1B-PR3P0C2J1 YLR154C-GYLR154C-G 150 nt19.74■□□□□ 0.75
TY1B-PR3P0C2J1 UBX6YJL048C 1191 nt19.73■□□□□ 0.75
TY1B-PR3P0C2J1 YCH1YGR203W 447 nt19.72■□□□□ 0.75
TY1B-PR3P0C2J1 MRPL8YJL063C 717 nt19.7■□□□□ 0.74
TY1B-PR3P0C2J1 LSM3YLR438C-A 270 nt19.7■□□□□ 0.74
TY1B-PR3P0C2J1 SPP1YPL138C 1062 nt19.7■□□□□ 0.74
TY1B-PR3P0C2J1 RTG1YOL067C 534 nt19.68■□□□□ 0.74
TY1B-PR3P0C2J1 PHO4YFR034C 939 nt19.66■□□□□ 0.74
TY1B-PR3P0C2J1 FPR4YLR449W 1179 nt19.64■□□□□ 0.73
TY1B-PR3P0C2J1 NAB2YGL122C 1578 nt19.62■□□□□ 0.73
TY1B-PR3P0C2J1 IMP2'YIL154C 1041 nt19.58■□□□□ 0.73
Retrieved 100 of 7,029 protein–RNA pairs in 7.9 ms