RNA–Protein interactions for RNA: YGL066W

SGF73, Transcript of SAGA complex subunit, yeast

Gene SGF73, Length 1,974 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SGF73	YGL066W	DRS1	P32892	752 aa	Known RBP	12.72	□□□□□ -0.37
SGF73	YGL066W	MTC1	P47018	478 aa	Known RBP	12.56	□□□□□ -0.4
SGF73	YGL066W	SGS1	P35187	1447 aa		12.38	□□□□□ -0.43
SGF73	YGL066W	SPA2	P23201	1466 aa	Known RBP	12.19	□□□□□ -0.46
SGF73	YGL066W	SSN2	P38931	1420 aa		12.07	□□□□□ -0.48
SGF73	YGL066W	INO80	P53115	1489 aa		11.95	□□□□□ -0.5
SGF73	YGL066W	TCB3	Q03640	1545 aa	Known RBP	11.6	□□□□□ -0.55
SGF73	YGL066W	TY1B-DR4	Q07793	1604 aa		11.42	□□□□□ -0.58
SGF73	YGL066W	HSL1	P34244	1518 aa		11.34	□□□□□ -0.59
SGF73	YGL066W	SKI3	P17883	1432 aa	Known RBP	11.33	□□□□□ -0.6
SGF73	YGL066W	SPT6	P23615	1451 aa	Known RBP	11.29	□□□□□ -0.6
SGF73	YGL066W	XRN1	P22147	1528 aa	Known RBP	11.19	□□□□□ -0.62
SGF73	YGL066W	HIR3	P47171	1648 aa		11.17	□□□□□ -0.62
SGF73	YGL066W	BFR2	Q06631	534 aa	Known RBP	11.16	□□□□□ -0.62
SGF73	YGL066W	MMS22	Q06164	1454 aa		11.08	□□□□□ -0.64
SGF73	YGL066W	CHD1	P32657	1468 aa		11.07	□□□□□ -0.64
SGF73	YGL066W	REV3	P14284	1504 aa		11.05	□□□□□ -0.64
SGF73	YGL066W	THO2	P53552	1597 aa	Known RBP	11.03	□□□□□ -0.64
SGF73	YGL066W	SIN3	P22579	1536 aa		10.98	□□□□□ -0.65
SGF73	YGL066W	SSK2	P53599	1579 aa		10.96	□□□□□ -0.66
SGF73	YGL066W	TAF2	P23255	1407 aa		10.95	□□□□□ -0.66
SGF73	YGL066W	SWR1	Q05471	1514 aa		10.95	□□□□□ -0.66
SGF73	YGL066W	MON2	P48563	1636 aa	Predicted RBP	10.91	□□□□□ -0.66
SGF73	YGL066W	MYO2	P19524	1574 aa	Known RBP	10.84	□□□□□ -0.67
SGF73	YGL066W	ESP1	Q03018	1630 aa		10.84	□□□□□ -0.67
SGF73	YGL066W	TFA1	P36100	482 aa		10.82	□□□□□ -0.68
SGF73	YGL066W	STU1	P38198	1513 aa		10.81	□□□□□ -0.68
SGF73	YGL066W	RSE1	Q04693	1361 aa	Known RBP	10.81	□□□□□ -0.68
SGF73	YGL066W	POL1	P13382	1468 aa		10.78	□□□□□ -0.68
SGF73	YGL066W	SAS10	Q12136	610 aa	Predicted RBP	10.77	□□□□□ -0.68
SGF73	YGL066W	UFD4	P33202	1483 aa		10.77	□□□□□ -0.69
SGF73	YGL066W	YTA7	P40340	1379 aa		10.76	□□□□□ -0.69
SGF73	YGL066W	DIP2	Q12220	943 aa	Predicted RBP	10.75	□□□□□ -0.69
SGF73	YGL066W	AVT3	P36062	692 aa		10.73	□□□□□ -0.69
SGF73	YGL066W	TRM732	Q03496	1420 aa		10.71	□□□□□ -0.69
SGF73	YGL066W	BPT1	P14772	1559 aa		10.71	□□□□□ -0.69
SGF73	YGL066W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	10.7	□□□□□ -0.7	not detected
SGF73	YGL066W	NOP2	P40991	618 aa	Known RBP	10.68	□□□□□ -0.7
SGF73	YGL066W	IKI3	Q06706	1349 aa	Known RBP	10.65	□□□□□ -0.7
SGF73	YGL066W	YPK9	Q12697	1472 aa		10.65	□□□□□ -0.7
SGF73	YGL066W	BUD4	P47136	1447 aa		10.64	□□□□□ -0.71
SGF73	YGL066W	SCC2	Q04002	1493 aa		10.63	□□□□□ -0.71
SGF73	YGL066W	ATG2	P53855	1592 aa		10.61	□□□□□ -0.71
SGF73	YGL066W	ECM5	Q03214	1411 aa		10.61	□□□□□ -0.71
SGF73	YGL066W	RKR1	Q04781	1562 aa		10.59	□□□□□ -0.71
SGF73	YGL066W	YOR1	P53049	1477 aa		10.59	□□□□□ -0.71
SGF73	YGL066W	DNA2	P38859	1522 aa		10.58	□□□□□ -0.72
SGF73	YGL066W	MYO4	P32492	1471 aa		10.58	□□□□□ -0.72
SGF73	YGL066W	SPP41	P38904	1435 aa		10.55	□□□□□ -0.72
SGF73	YGL066W	SSM4	P40318	1319 aa		10.5	□□□□□ -0.73
SGF73	YGL066W	TAF7	Q05021	590 aa		10.5	□□□□□ -0.73
SGF73	YGL066W	SNQ2	P32568	1501 aa	Known RBP	10.48	□□□□□ -0.73
SGF73	YGL066W	NUP170	P38181	1502 aa		10.48	□□□□□ -0.73
SGF73	YGL066W	STH1	P32597	1359 aa		10.47	□□□□□ -0.73
SGF73	YGL066W	SMC4	Q12267	1418 aa		10.45	□□□□□ -0.74
SGF73	YGL066W	RPO31	P04051	1460 aa		10.45	□□□□□ -0.74
SGF73	YGL066W	TOP2	P06786	1428 aa	Known RBP	10.44	□□□□□ -0.74
SGF73	YGL066W	KOG1	P38873	1557 aa		10.43	□□□□□ -0.74
SGF73	YGL066W	PEP1	P32319	1579 aa		10.41	□□□□□ -0.74
SGF73	YGL066W	MLP2	P40457	1679 aa		10.4	□□□□□ -0.74
SGF73	YGL066W	IFH1	P39520	1085 aa		10.39	□□□□□ -0.75
SGF73	YGL066W	YCF1	P39109	1515 aa	Known RBP	10.38	□□□□□ -0.75
SGF73	YGL066W	POL5	P39985	1022 aa	Known RBP	10.37	□□□□□ -0.75
SGF73	YGL066W	PDR15	Q04182	1529 aa	Known RBP	10.36	□□□□□ -0.75
SGF73	YGL066W	GEA1	P47102	1408 aa	Predicted RBP	10.36	□□□□□ -0.75
SGF73	YGL066W	ENP1	P38333	483 aa	Known RBP	10.35	□□□□□ -0.75
SGF73	YGL066W	PAN1	P32521	1480 aa		10.35	□□□□□ -0.75
SGF73	YGL066W	MDS3	P53094	1487 aa		10.35	□□□□□ -0.75
SGF73	YGL066W	TY1B-DR3	Q99231	1755 aa		10.35	□□□□□ -0.75
SGF73	YGL066W	TY2B-LR1	P0C2J3	1770 aa		10.34	□□□□□ -0.75
SGF73	YGL066W	TY2B-F	P0CX63	1770 aa		10.34	□□□□□ -0.75
SGF73	YGL066W	TY2B-GR2	P0CX64	1770 aa		10.34	□□□□□ -0.75
SGF73	YGL066W	TY2B-C	P25384	1770 aa		10.34	□□□□□ -0.75
SGF73	YGL066W	TY2B-DR2	Q03494	1770 aa		10.34	□□□□□ -0.75
SGF73	YGL066W	TY1B-DR1	Q03855	1755 aa		10.34	□□□□□ -0.75
SGF73	YGL066W	TY2B-DR3	Q07791	1770 aa	Known RBP	10.34	□□□□□ -0.75
SGF73	YGL066W	TY2B-OR1	Q12113	1770 aa		10.34	□□□□□ -0.75
SGF73	YGL066W	TY2B-DR1	Q12472	1770 aa		10.34	□□□□□ -0.75
SGF73	YGL066W	TY2B-OR2	Q12501	1770 aa		10.34	□□□□□ -0.75
SGF73	YGL066W	TSC11	P40061	1430 aa		10.31	□□□□□ -0.76
SGF73	YGL066W	RTT106	P40161	455 aa		10.29	□□□□□ -0.76
SGF73	YGL066W	ULS1	Q08562	1619 aa		10.28	□□□□□ -0.76
SGF73	YGL066W	FAP1	P53971	965 aa		10.26	□□□□□ -0.77
SGF73	YGL066W	TY2B-B	Q12491	1770 aa		10.26	□□□□□ -0.77
SGF73	YGL066W	SPT7	P35177	1332 aa		10.23	□□□□□ -0.77
SGF73	YGL066W	TY3B-G	Q99315	1547 aa		10.21	□□□□□ -0.78
SGF73	YGL066W	SEC3	P33332	1336 aa	Known RBP	10.19	□□□□□ -0.78
SGF73	YGL066W	PDR10	P51533	1564 aa		10.16	□□□□□ -0.78
SGF73	YGL066W	VPS15	P22219	1454 aa		10.16	□□□□□ -0.78
SGF73	YGL066W	TY1B-H	O13535	1793 aa		10.15	□□□□□ -0.78
SGF73	YGL066W	TY1B-DR5	P0C2I2	1755 aa		10.15	□□□□□ -0.78
SGF73	YGL066W	TY1B-DR6	P0C2I3	1755 aa		10.15	□□□□□ -0.78
SGF73	YGL066W	TY1B-LR2	P0C2I5	1755 aa		10.15	□□□□□ -0.78
SGF73	YGL066W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	10.15	□□□□□ -0.78
SGF73	YGL066W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	10.15	□□□□□ -0.78
SGF73	YGL066W	TY1B-PR2	P0C2J0	1756 aa		10.15	□□□□□ -0.78
SGF73	YGL066W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	10.15	□□□□□ -0.78
SGF73	YGL066W	TY1B-JR1	P47098	1755 aa		10.15	□□□□□ -0.78
SGF73	YGL066W	TY1B-ML2	Q03434	1755 aa	Known RBP	10.15	□□□□□ -0.78
SGF73	YGL066W	TY1B-ER1	Q03612	1755 aa		10.15	□□□□□ -0.78

Retrieved 100 of 5,963 RNA–protein pairs in 31.4 ms