RNA–Protein interactions for RNA: YFR050C

PRE4, Transcript of Beta 7 subunit of the 20S proteasome, yeastyeast

Gene PRE4, Length 801 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE4YFR050C FAP1P53971 965 aa7.72□□□□□ -1.17
PRE4YFR050C INO80P53115 1489 aa7.67□□□□□ -1.18
PRE4YFR050C MON2P48563 1636 aaPredicted RBP7.65□□□□□ -1.18
PRE4YFR050C RSE1Q04693 1361 aaKnown RBP7.64□□□□□ -1.19
PRE4YFR050C MTC1P47018 478 aaKnown RBP7.58□□□□□ -1.2
PRE4YFR050C DRS1P32892 752 aaKnown RBP7.36□□□□□ -1.23
PRE4YFR050C PRY3P47033 881 aa7.34□□□□□ -1.23
PRE4YFR050C DNA2P38859 1522 aa7.32□□□□□ -1.24
PRE4YFR050C SPA2P23201 1466 aaKnown RBP7.12□□□□□ -1.27
PRE4YFR050C YCK3P39962 524 aa7.11□□□□□ -1.27
PRE4YFR050C MIF2P35201 549 aa7.03□□□□□ -1.28
PRE4YFR050C KOG1P38873 1557 aa6.95□□□□□ -1.3
PRE4YFR050C AAD16Q02895 342 aa6.93□□□□□ -1.3
PRE4YFR050C PRI1P10363 409 aa6.91□□□□□ -1.3
PRE4YFR050C HAA1Q12753 694 aaKnown RBP6.82□□□□□ -1.32
PRE4YFR050C SWR1Q05471 1514 aa6.81□□□□□ -1.32
PRE4YFR050C YFR006WP43590 535 aa6.76□□□□□ -1.33
PRE4YFR050C TSR3Q12094 313 aaKnown RBP6.47□□□□□ -1.37
PRE4YFR050C RPG1P38249 964 aaKnown RBP6.41□□□□□ -1.38
PRE4YFR050C ISW2Q08773 1120 aa6.39□□□□□ -1.39
PRE4YFR050C DIP2Q12220 943 aaPredicted RBP6.33□□□□□ -1.4
PRE4YFR050C BFR2Q06631 534 aaKnown RBP6.27□□□□□ -1.41
PRE4YFR050C TY1B-DR4Q07793 1604 aa6.24□□□□□ -1.41
PRE4YFR050C REV3P14284 1504 aa6.2□□□□□ -1.42
PRE4YFR050C ABP1P15891 592 aaKnown RBP6.19□□□□□ -1.42
PRE4YFR050C ECM5Q03214 1411 aa6.18□□□□□ -1.42
PRE4YFR050C AVT3P36062 692 aa6.14□□□□□ -1.43
PRE4YFR050C MRPL32P25348 183 aa6.13□□□□□ -1.43
PRE4YFR050C YGL015CP33199 130 aa6.13□□□□□ -1.43
PRE4YFR050C BUD31P25337 157 aaPredicted RBP6.08□□□□□ -1.44
PRE4YFR050C BNI1P41832 1953 aa6.04□□□□□ -1.44
PRE4YFR050C TCB3Q03640 1545 aaKnown RBP6.03□□□□□ -1.44
PRE4YFR050C MDS3P53094 1487 aa5.98□□□□□ -1.45
PRE4YFR050C ITT1Q04638 464 aa5.91□□□□□ -1.46
PRE4YFR050C BPT1P14772 1559 aa5.91□□□□□ -1.46
PRE4YFR050C IRC20Q06554 1556 aa5.9□□□□□ -1.46
PRE4YFR050C BUD4P47136 1447 aa5.9□□□□□ -1.47
PRE4YFR050C PEP1P32319 1579 aa5.89□□□□□ -1.47
PRE4YFR050C MYO2P19524 1574 aaKnown RBP5.86□□□□□ -1.47
PRE4YFR050C DNF1P32660 1571 aa5.86□□□□□ -1.47
PRE4YFR050C THO2P53552 1597 aaKnown RBP5.86□□□□□ -1.47
PRE4YFR050C RPL17AP05740 184 aaKnown RBP5.83□□□□□ -1.48
PRE4YFR050C RPL17BP46990 184 aaKnown RBP5.83□□□□□ -1.48
PRE4YFR050C REB1P21538 810 aa5.82□□□□□ -1.48
PRE4YFR050C LTE1P07866 1435 aa5.82□□□□□ -1.48
PRE4YFR050C HIR3P47171 1648 aa5.81□□□□□ -1.48
PRE4YFR050C CDC27P38042 758 aa5.8□□□□□ -1.48
PRE4YFR050C TAF2P23255 1407 aa5.79□□□□□ -1.48
PRE4YFR050C MMS1Q06211 1407 aa5.79□□□□□ -1.48
PRE4YFR050C CDC25P04821 1589 aa5.78□□□□□ -1.48
PRE4YFR050C YCF1P39109 1515 aaKnown RBP5.77□□□□□ -1.49
PRE4YFR050C RPA190P10964 1664 aaKnown RBP5.75□□□□□ -1.49
PRE4YFR050C SPT6P23615 1451 aaKnown RBP5.75□□□□□ -1.49
PRE4YFR050C HSL1P34244 1518 aa5.74□□□□□ -1.49
PRE4YFR050C MET5P47169 1442 aa5.69□□□□□ -1.5
PRE4YFR050C MAP2P38174 421 aaKnown RBP5.69□□□□□ -1.5
PRE4YFR050C TFA1P36100 482 aa5.68□□□□□ -1.5
PRE4YFR050C UBP10P53874 792 aaPredicted RBP5.67□□□□□ -1.5
PRE4YFR050C RPO31P04051 1460 aa5.66□□□□□ -1.5
PRE4YFR050C SIS1P25294 352 aaKnown RBP5.63□□□□□ -1.51
PRE4YFR050C GEA2P39993 1459 aaKnown RBP5.62□□□□□ -1.51
PRE4YFR050C SSK2P53599 1579 aa5.62□□□□□ -1.51
PRE4YFR050C YOR093CQ12275 1648 aa5.59□□□□□ -1.51
PRE4YFR050C YKR023WP36119 530 aaKnown RBP5.58□□□□□ -1.52
PRE4YFR050C ESC1Q03661 1658 aaKnown RBP5.58□□□□□ -1.52
PRE4YFR050C DNF2Q12675 1612 aa5.56□□□□□ -1.52
PRE4YFR050C RRD1P40454 393 aaKnown RBP5.55□□□□□ -1.52
PRE4YFR050C SPT21P35209 758 aa5.54□□□□□ -1.52
PRE4YFR050C ATG2P53855 1592 aa5.53□□□□□ -1.52
PRE4YFR050C DCD1P06773 312 aa5.45□□□□□ -1.54
PRE4YFR050C DRS2P39524 1355 aa5.44□□□□□ -1.54
PRE4YFR050C UBP9P39967 754 aa5.44□□□□□ -1.54
PRE4YFR050C RKR1Q04781 1562 aa5.44□□□□□ -1.54
PRE4YFR050C TGL3P40308 642 aa5.43□□□□□ -1.54
PRE4YFR050C TFC8Q12308 588 aa5.43□□□□□ -1.54
PRE4YFR050C RIM101P33400 625 aa5.42□□□□□ -1.54
PRE4YFR050C SGS1P35187 1447 aa5.41□□□□□ -1.54
PRE4YFR050C HOP09932 586 aa5.41□□□□□ -1.54
PRE4YFR050C NTE1Q04958 1679 aa5.4□□□□□ -1.54
PRE4YFR050C GLN1P32288 370 aaKnown RBP5.39□□□□□ -1.55
PRE4YFR050C SCY1P53009 804 aa5.38□□□□□ -1.55
PRE4YFR050C TIF4632P39936 914 aaKnown RBP5.36□□□□□ -1.55
PRE4YFR050C PDR15Q04182 1529 aaKnown RBP5.36□□□□□ -1.55
PRE4YFR050C SLX5P32828 619 aaKnown RBP5.33□□□□□ -1.56
PRE4YFR050C CHD1P32657 1468 aa5.32□□□□□ -1.56
PRE4YFR050C SKI3P17883 1432 aaKnown RBP5.28□□□□□ -1.56
PRE4YFR050C UFD4P33202 1483 aa5.27□□□□□ -1.57
PRE4YFR050C YRF1-1P0CX20 1796 aa5.27□□□□□ -1.57
PRE4YFR050C YRF1-5P0CX21 1796 aa5.27□□□□□ -1.57
PRE4YFR050C YRF1-8P0CX22 1796 aa5.27□□□□□ -1.57
PRE4YFR050C XRN1P22147 1528 aaKnown RBP5.27□□□□□ -1.57
PRE4YFR050C YIL055CP40523 627 aaKnown RBP5.25□□□□□ -1.57
PRE4YFR050C PTP3P40048 928 aa5.24□□□□□ -1.57
PRE4YFR050C YPK9Q12697 1472 aa5.24□□□□□ -1.57
PRE4YFR050C OXP1P28273 1286 aa5.23□□□□□ -1.57
PRE4YFR050C BCH2P36122 765 aa5.21□□□□□ -1.58
PRE4YFR050C YAH1Q12184 172 aaKnown RBP5.21□□□□□ -1.58
PRE4YFR050C SIN3P22579 1536 aa5.21□□□□□ -1.58
PRE4YFR050C TY1B-BRQ12193 1756 aa5.21□□□□□ -1.58
PRE4YFR050C TY1B-GR3Q12316 1755 aa5.21□□□□□ -1.58
Retrieved 100 of 5,963 RNA–protein pairs in 23.3 ms