RNA–Protein interactions for RNA: YCR005C

CIT2, Transcript of Citrate synthase, yeastyeast

Gene CIT2, Length 1,383 nt, Biotype protein coding, Subcellular localisation Mitochondria, Peroxisome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CIT2YCR005C MTC1P47018 478 aaKnown RBP15.76■□□□□ 0.11
CIT2YCR005C DRS1P32892 752 aaKnown RBP15.75■□□□□ 0.11
CIT2YCR005C BFR2Q06631 534 aaKnown RBP13.61□□□□□ -0.23
CIT2YCR005C DIP2Q12220 943 aaPredicted RBP13.44□□□□□ -0.26
CIT2YCR005C AVT3P36062 692 aa13.19□□□□□ -0.3
CIT2YCR005C FAP1P53971 965 aa13.08□□□□□ -0.31
CIT2YCR005C SGS1P35187 1447 aa13.05□□□□□ -0.32
CIT2YCR005C ISW2Q08773 1120 aa12.96□□□□□ -0.33
CIT2YCR005C INO80P53115 1489 aa12.95□□□□□ -0.34
CIT2YCR005C MON2P48563 1636 aaPredicted RBP12.93□□□□□ -0.34
CIT2YCR005C TCB3Q03640 1545 aaKnown RBP12.86□□□□□ -0.35
CIT2YCR005C RSE1Q04693 1361 aaKnown RBP12.77□□□□□ -0.37
CIT2YCR005C TFA1P36100 482 aa12.73□□□□□ -0.37
CIT2YCR005C PRI1P10363 409 aa12.7□□□□□ -0.38
CIT2YCR005C TY1B-DR4Q07793 1604 aa12.68□□□□□ -0.38
CIT2YCR005C RPG1P38249 964 aaKnown RBP12.67□□□□□ -0.38
CIT2YCR005C SWR1Q05471 1514 aa12.56□□□□□ -0.4
CIT2YCR005C AAD16Q02895 342 aa12.56□□□□□ -0.4
CIT2YCR005C HSL1P34244 1518 aa12.4□□□□□ -0.42
CIT2YCR005C SPT6P23615 1451 aaKnown RBP12.4□□□□□ -0.42
CIT2YCR005C SPA2P23201 1466 aaKnown RBP12.38□□□□□ -0.43
CIT2YCR005C DNA2P38859 1522 aa12.32□□□□□ -0.44
CIT2YCR005C SSN2P38931 1420 aa12.29□□□□□ -0.44
CIT2YCR005C KOG1P38873 1557 aa12.28□□□□□ -0.44
CIT2YCR005C RPL17AP05740 184 aaKnown RBP12.22□□□□□ -0.45
CIT2YCR005C RPL17BP46990 184 aaKnown RBP12.22□□□□□ -0.45
CIT2YCR005C PRY3P47033 881 aa12.18□□□□□ -0.46
CIT2YCR005C REB1P21538 810 aa12.18□□□□□ -0.46
CIT2YCR005C HIR3P47171 1648 aa12.16□□□□□ -0.46
CIT2YCR005C XRN1P22147 1528 aaKnown RBP12.06□□□□□ -0.48
CIT2YCR005C TSR3Q12094 313 aaKnown RBP12.01□□□□□ -0.49
CIT2YCR005C THO2P53552 1597 aaKnown RBP11.9□□□□□ -0.5
CIT2YCR005C BUD4P47136 1447 aa11.89□□□□□ -0.51
CIT2YCR005C ECM5Q03214 1411 aa11.87□□□□□ -0.51
CIT2YCR005C REV3P14284 1504 aa11.87□□□□□ -0.51
CIT2YCR005C SIN3P22579 1536 aa11.75□□□□□ -0.53
CIT2YCR005C TAF2P23255 1407 aa11.74□□□□□ -0.53
CIT2YCR005C MDS3P53094 1487 aa11.7□□□□□ -0.54
CIT2YCR005C SPT21P35209 758 aa11.7□□□□□ -0.54
CIT2YCR005C MRPL32P25348 183 aa11.69□□□□□ -0.54
CIT2YCR005C SSK2P53599 1579 aa11.68□□□□□ -0.54
CIT2YCR005C ATG2P53855 1592 aa11.67□□□□□ -0.54
CIT2YCR005C SKI3P17883 1432 aaKnown RBP11.63□□□□□ -0.55
CIT2YCR005C HAA1Q12753 694 aaKnown RBP11.62□□□□□ -0.55
CIT2YCR005C ESP1Q03018 1630 aa11.6□□□□□ -0.55
CIT2YCR005C PEP1P32319 1579 aa11.6□□□□□ -0.55
CIT2YCR005C RIM101P33400 625 aa11.57□□□□□ -0.56
CIT2YCR005C MYO2P19524 1574 aaKnown RBP11.57□□□□□ -0.56
CIT2YCR005C YPK9Q12697 1472 aa11.45□□□□□ -0.58
CIT2YCR005C BPT1P14772 1559 aa11.37□□□□□ -0.59
CIT2YCR005C SCC2Q04002 1493 aa11.36□□□□□ -0.59
CIT2YCR005C UFD4P33202 1483 aa11.35□□□□□ -0.59
CIT2YCR005C YKR023WP36119 530 aaKnown RBP11.32□□□□□ -0.6
CIT2YCR005C RPO31P04051 1460 aa11.3□□□□□ -0.6
CIT2YCR005C YCK3P39962 524 aa11.28□□□□□ -0.6
CIT2YCR005C POL1P13382 1468 aa11.28□□□□□ -0.6
CIT2YCR005C RKR1Q04781 1562 aa11.24□□□□□ -0.61
CIT2YCR005C STU1P38198 1513 aa11.23□□□□□ -0.61
CIT2YCR005C TOP2P06786 1428 aaKnown RBP11.21□□□□□ -0.62
CIT2YCR005C YCF1P39109 1515 aaKnown RBP11.2□□□□□ -0.62
CIT2YCR005C YIL055CP40523 627 aaKnown RBP11.19□□□□□ -0.62
CIT2YCR005C RQC2Q12532 1038 aaKnown RBP11.17□□□□□ -0.62
CIT2YCR005C TY2B-LR1P0C2J3 1770 aa11.16□□□□□ -0.62
CIT2YCR005C TY2B-FP0CX63 1770 aa11.16□□□□□ -0.62
CIT2YCR005C TY2B-GR2P0CX64 1770 aa11.16□□□□□ -0.62
CIT2YCR005C TY2B-CP25384 1770 aa11.16□□□□□ -0.62
CIT2YCR005C TY2B-DR2Q03494 1770 aa11.16□□□□□ -0.62
CIT2YCR005C TY1B-DR1Q03855 1755 aa11.16□□□□□ -0.62
CIT2YCR005C TY2B-DR3Q07791 1770 aaKnown RBP11.16□□□□□ -0.62
CIT2YCR005C TY2B-OR1Q12113 1770 aa11.16□□□□□ -0.62
CIT2YCR005C TY2B-DR1Q12472 1770 aa11.16□□□□□ -0.62
CIT2YCR005C TY2B-OR2Q12501 1770 aa11.16□□□□□ -0.62
CIT2YCR005C TFC8Q12308 588 aa11.16□□□□□ -0.62
CIT2YCR005C YOR1P53049 1477 aa11.15□□□□□ -0.62
CIT2YCR005C OXP1P28273 1286 aa11.13□□□□□ -0.63
CIT2YCR005C YTA7P40340 1379 aa11.12□□□□□ -0.63
CIT2YCR005C SMC4Q12267 1418 aa11.12□□□□□ -0.63
CIT2YCR005C HOP09932 586 aa11.1□□□□□ -0.63
CIT2YCR005C PTP3P40048 928 aa11.1□□□□□ -0.63
CIT2YCR005C CDC25P04821 1589 aa11.09□□□□□ -0.63
CIT2YCR005C CDC27P38042 758 aa11.08□□□□□ -0.64
CIT2YCR005C CHD1P32657 1468 aa11.08□□□□□ -0.64
CIT2YCR005C SSP1P38871 571 aa11.07□□□□□ -0.64
CIT2YCR005C TY1B-DR3Q99231 1755 aa11.06□□□□□ -0.64
CIT2YCR005C TY2B-BQ12491 1770 aa11.05□□□□□ -0.64
CIT2YCR005C ARP8Q12386 881 aaKnown RBP RIP-Chip data11.04□□□□□ -0.64not detected
CIT2YCR005C TY1B-BRQ12193 1756 aa11.04□□□□□ -0.64
CIT2YCR005C TY1B-GR3Q12316 1755 aa11.04□□□□□ -0.64
CIT2YCR005C TY1B-ORQ92393 1755 aa11.04□□□□□ -0.64
CIT2YCR005C MMS22Q06164 1454 aa11.03□□□□□ -0.64
CIT2YCR005C MYO4P32492 1471 aa11.01□□□□□ -0.65
CIT2YCR005C PAN1P32521 1480 aa11.01□□□□□ -0.65
CIT2YCR005C YAH1Q12184 172 aaKnown RBP11.01□□□□□ -0.65
CIT2YCR005C ESC1Q03661 1658 aaKnown RBP11□□□□□ -0.65
CIT2YCR005C TY1B-HO13535 1793 aa11□□□□□ -0.65
CIT2YCR005C TY1B-DR5P0C2I2 1755 aa11□□□□□ -0.65
CIT2YCR005C TY1B-DR6P0C2I3 1755 aa11□□□□□ -0.65
CIT2YCR005C TY1B-LR2P0C2I5 1755 aa11□□□□□ -0.65
CIT2YCR005C TY1B-LR3P0C2I6 1755 aaKnown RBP11□□□□□ -0.65
CIT2YCR005C TY1B-PR1P0C2I9 1755 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 5,963 RNA–protein pairs in 8.7 ms