RNA–Protein interactions for RNA: YBR221C

PDB1, Transcript of E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, yeastyeast

Gene PDB1, Length 1,101 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PDB1YBR221C DRS1P32892 752 aaKnown RBP10.79□□□□□ -0.68
PDB1YBR221C TFA1P36100 482 aa10.29□□□□□ -0.76
PDB1YBR221C RQC2Q12532 1038 aaKnown RBP10.24□□□□□ -0.77
PDB1YBR221C INO80P53115 1489 aa10.18□□□□□ -0.78
PDB1YBR221C MON2P48563 1636 aaPredicted RBP10.08□□□□□ -0.8
PDB1YBR221C TAF7Q05021 590 aa9.96□□□□□ -0.82
PDB1YBR221C BFR2Q06631 534 aaKnown RBP9.94□□□□□ -0.82
PDB1YBR221C DNA2P38859 1522 aa9.66□□□□□ -0.86
PDB1YBR221C RSE1Q04693 1361 aaKnown RBP9.51□□□□□ -0.89
PDB1YBR221C SWR1Q05471 1514 aa9.51□□□□□ -0.89
PDB1YBR221C KOG1P38873 1557 aa9.44□□□□□ -0.9
PDB1YBR221C MTC1P47018 478 aaKnown RBP9.39□□□□□ -0.91
PDB1YBR221C TCB3Q03640 1545 aaKnown RBP9.34□□□□□ -0.91
PDB1YBR221C TY1B-DR4Q07793 1604 aa9.24□□□□□ -0.93
PDB1YBR221C SGS1P35187 1447 aa9.06□□□□□ -0.96
PDB1YBR221C LEO1P38439 464 aa9□□□□□ -0.97
PDB1YBR221C DMA1P38823 416 aa8.99□□□□□ -0.97
PDB1YBR221C SPA2P23201 1466 aaKnown RBP8.98□□□□□ -0.97
PDB1YBR221C AVT3P36062 692 aa8.97□□□□□ -0.97
PDB1YBR221C ECM5Q03214 1411 aa8.94□□□□□ -0.98
PDB1YBR221C SPT6P23615 1451 aaKnown RBP8.93□□□□□ -0.98
PDB1YBR221C HSL1P34244 1518 aa8.9□□□□□ -0.99
PDB1YBR221C FAP1P53971 965 aa8.89□□□□□ -0.99
PDB1YBR221C BUD4P47136 1447 aa8.79□□□□□ -1
PDB1YBR221C DIP2Q12220 943 aaPredicted RBP8.73□□□□□ -1.01
PDB1YBR221C THO2P53552 1597 aaKnown RBP8.71□□□□□ -1.02
PDB1YBR221C HIR3P47171 1648 aa8.7□□□□□ -1.02
PDB1YBR221C MDS3P53094 1487 aa8.68□□□□□ -1.02
PDB1YBR221C REV3P14284 1504 aa8.62□□□□□ -1.03
PDB1YBR221C PEP1P32319 1579 aa8.55□□□□□ -1.04
PDB1YBR221C XRN1P22147 1528 aaKnown RBP8.53□□□□□ -1.04
PDB1YBR221C BPT1P14772 1559 aa8.47□□□□□ -1.05
PDB1YBR221C MIF2P35201 549 aa8.44□□□□□ -1.06
PDB1YBR221C AIM44Q99299 758 aa8.41□□□□□ -1.06
PDB1YBR221C ATG2P53855 1592 aa8.39□□□□□ -1.07
PDB1YBR221C LEU3P08638 886 aa8.37□□□□□ -1.07
PDB1YBR221C NAP1P25293 417 aaKnown RBP8.34□□□□□ -1.07
PDB1YBR221C SKI3P17883 1432 aaKnown RBP8.34□□□□□ -1.07
PDB1YBR221C PRY3P47033 881 aa8.33□□□□□ -1.08
PDB1YBR221C YCF1P39109 1515 aaKnown RBP8.32□□□□□ -1.08
PDB1YBR221C URN1Q06525 465 aaKnown RBP8.29□□□□□ -1.08
PDB1YBR221C TAF2P23255 1407 aa8.29□□□□□ -1.08
PDB1YBR221C SSK2P53599 1579 aa8.22□□□□□ -1.09
PDB1YBR221C IFH1P39520 1085 aa8.21□□□□□ -1.1
PDB1YBR221C DMA2P53924 522 aa8.2□□□□□ -1.1
PDB1YBR221C IOC4Q04213 475 aa8.2□□□□□ -1.1
PDB1YBR221C MET5P47169 1442 aa8.2□□□□□ -1.1
PDB1YBR221C UFD4P33202 1483 aa8.19□□□□□ -1.1
PDB1YBR221C SIN3P22579 1536 aa8.18□□□□□ -1.1
PDB1YBR221C SSN2P38931 1420 aa8.17□□□□□ -1.1
PDB1YBR221C LTE1P07866 1435 aa8.16□□□□□ -1.1
PDB1YBR221C YFR006WP43590 535 aa8.13□□□□□ -1.11
PDB1YBR221C RLF2Q12495 606 aa8.13□□□□□ -1.11
PDB1YBR221C CHD1P32657 1468 aa8.12□□□□□ -1.11
PDB1YBR221C PTP3P40048 928 aa8.1□□□□□ -1.11
PDB1YBR221C MYO2P19524 1574 aaKnown RBP8.1□□□□□ -1.11
PDB1YBR221C ABP1P15891 592 aaKnown RBP8.09□□□□□ -1.11
PDB1YBR221C ITT1Q04638 464 aa8.09□□□□□ -1.11
PDB1YBR221C SAS10Q12136 610 aaPredicted RBP8.09□□□□□ -1.11
PDB1YBR221C AAD16Q02895 342 aa8.08□□□□□ -1.12
PDB1YBR221C DNF1P32660 1571 aa8.06□□□□□ -1.12
PDB1YBR221C SCC2Q04002 1493 aa8.06□□□□□ -1.12
PDB1YBR221C CDC25P04821 1589 aa8.05□□□□□ -1.12
PDB1YBR221C YPK9Q12697 1472 aa8.05□□□□□ -1.12
PDB1YBR221C PRI1P10363 409 aa8.04□□□□□ -1.12
PDB1YBR221C RPO31P04051 1460 aa8.04□□□□□ -1.12
PDB1YBR221C RPN1P38764 993 aaKnown RBP8.03□□□□□ -1.12
PDB1YBR221C ESP1Q03018 1630 aa8.02□□□□□ -1.13
PDB1YBR221C BNI1P41832 1953 aa8.02□□□□□ -1.13
PDB1YBR221C ORC1P54784 914 aaPredicted RBP8.01□□□□□ -1.13
PDB1YBR221C PAN1P32521 1480 aa8□□□□□ -1.13
PDB1YBR221C GEA2P39993 1459 aaKnown RBP7.99□□□□□ -1.13
PDB1YBR221C YRB30P53107 440 aaPredicted RBP7.98□□□□□ -1.13
PDB1YBR221C RPA190P10964 1664 aaKnown RBP7.97□□□□□ -1.13
PDB1YBR221C RKR1Q04781 1562 aa7.97□□□□□ -1.13
PDB1YBR221C MMS1Q06211 1407 aa7.95□□□□□ -1.14
PDB1YBR221C ESC1Q03661 1658 aaKnown RBP7.89□□□□□ -1.15
PDB1YBR221C TOP2P06786 1428 aaKnown RBP7.89□□□□□ -1.15
PDB1YBR221C DRS2P39524 1355 aa7.89□□□□□ -1.15
PDB1YBR221C TRM732Q03496 1420 aa7.87□□□□□ -1.15
PDB1YBR221C TOP1P04786 769 aa7.86□□□□□ -1.15
PDB1YBR221C MMS22Q06164 1454 aa7.86□□□□□ -1.15
PDB1YBR221C TY1B-BRQ12193 1756 aa7.85□□□□□ -1.15
PDB1YBR221C TY1B-GR3Q12316 1755 aa7.85□□□□□ -1.15
PDB1YBR221C TY1B-ORQ92393 1755 aa7.85□□□□□ -1.15
PDB1YBR221C ISW2Q08773 1120 aa7.85□□□□□ -1.15
PDB1YBR221C TY2B-LR1P0C2J3 1770 aa7.84□□□□□ -1.15
PDB1YBR221C TY2B-FP0CX63 1770 aa7.84□□□□□ -1.15
PDB1YBR221C TY2B-GR2P0CX64 1770 aa7.84□□□□□ -1.15
PDB1YBR221C TY2B-CP25384 1770 aa7.84□□□□□ -1.15
PDB1YBR221C TY2B-DR2Q03494 1770 aa7.84□□□□□ -1.15
PDB1YBR221C TY1B-DR1Q03855 1755 aa7.84□□□□□ -1.15
PDB1YBR221C TY2B-DR3Q07791 1770 aaKnown RBP7.84□□□□□ -1.15
PDB1YBR221C TY2B-OR1Q12113 1770 aa7.84□□□□□ -1.15
PDB1YBR221C TY2B-DR1Q12472 1770 aa7.84□□□□□ -1.15
PDB1YBR221C TY2B-OR2Q12501 1770 aa7.84□□□□□ -1.15
PDB1YBR221C CKB1P43639 278 aa7.82□□□□□ -1.16
PDB1YBR221C SSP1P38871 571 aa7.8□□□□□ -1.16
PDB1YBR221C NUP159P40477 1460 aa7.8□□□□□ -1.16
PDB1YBR221C HAA1Q12753 694 aaKnown RBP7.79□□□□□ -1.16
Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms