RNA–Protein interactions for RNA: ENST00000389641.8

CCDC57-202, Transcript of coiled-coil domain containing 57, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC57, Length 3,000 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC57-202ENST00000389641 SF3B1O75533 1304 aaKnown RBP eCLIP13.94□□□□□ -0.182e-6■■■■■ 171
CCDC57-202ENST00000389641 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.46□□□□□ -0.12e-6■■■■■ 167.3
CCDC57-202ENST00000389641 AGGF1Q8N302 714 aaeCLIP14.41□□□□□ -0.13e-8■■■■■ 151.5
CCDC57-202ENST00000389641 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.41□□□□□ -0.12e-7■■■■■ 102.3
CCDC57-202ENST00000389641 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.12□□□□□ -0.317e-10■■■■■ 66.3
CCDC57-202ENST00000389641 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.64□□□□□ -0.078e-9■■■■■ 60.5
CCDC57-202ENST00000389641 DDX3XO00571 662 aaKnown RBP eCLIP14.55□□□□□ -0.081e-6■■■■■ 53.7
CCDC57-202ENST00000389641 TARDBPQ13148 414 aaKnown RBP eCLIP13.02□□□□□ -0.339e-7■■■■■ 53.6
CCDC57-202ENST00000389641 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.74□□□□□ -0.214e-7■■■■■ 41
CCDC57-202ENST00000389641 ZRANB2O95218 330 aaKnown RBP eCLIP15.72■□□□□ 0.115e-6■■■■■ 40.6
CCDC57-202ENST00000389641 YBX3P16989 372 aaKnown RBP eCLIP13.53□□□□□ -0.243e-7■■■■■ 40.2
CCDC57-202ENST00000389641 AATFQ9NY61 560 aaKnown RBP eCLIP15.03■□□□□ -01e-6■■■■■ 39
CCDC57-202ENST00000389641 RBFOX2O43251 390 aaKnown RBP eCLIP11.43□□□□□ -0.581e-9■■■■■ 38.8
CCDC57-202ENST00000389641 GTF2F1P35269 517 aaKnown RBP eCLIP16.31■□□□□ 0.23e-7■■■■■ 37.3
CCDC57-202ENST00000389641 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10□□□□□ -0.816e-7■■■■■ 36.6
CCDC57-202ENST00000389641 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.43□□□□□ -0.13e-7■■■■■ 34.1
CCDC57-202ENST00000389641 SF3A3Q12874 501 aaKnown RBP eCLIP15.03■□□□□ -01e-6■■■■■ 32.9
CCDC57-202ENST00000389641 HNRNPLP14866 589 aaKnown RBP eCLIP13.65□□□□□ -0.221e-7■■■■■ 32
CCDC57-202ENST00000389641 FTOQ9C0B1 505 aaKnown RBP eCLIP15.83■□□□□ 0.124e-7■■■■■ 31.3
CCDC57-202ENST00000389641 CDC40O60508 579 aaKnown RBP eCLIP12.18□□□□□ -0.462e-6■■■■■ 29.1
CCDC57-202ENST00000389641 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.52□□□□□ -0.242e-7■■■■■ 28.1
CCDC57-202ENST00000389641 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.51□□□□□ -0.414e-6■■■■■ 27
CCDC57-202ENST00000389641 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.78□□□□□ -0.041e-6■■■■■ 26.8
CCDC57-202ENST00000389641 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.58□□□□□ -0.072e-6■■■■□ 24.4
CCDC57-202ENST00000389641 HNRNPMP52272 730 aaKnown RBP eCLIP17.13■□□□□ 0.331e-6■■■■□ 23.2
CCDC57-202ENST00000389641 SF3B4Q15427 424 aaKnown RBP eCLIP13.62□□□□□ -0.233e-8■■■■□ 23.2
CCDC57-202ENST00000389641 TAF15Q92804 592 aaKnown RBP eCLIP11.47□□□□□ -0.573e-6■■■■□ 23
CCDC57-202ENST00000389641 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.27■□□□□ 0.22e-6■■■■□ 21.8
CCDC57-202ENST00000389641 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.97□□□□□ -0.339e-8■■■■□ 21
CCDC57-202ENST00000389641 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.37□□□□□ -0.111e-6■■■■□ 20.7
CCDC57-202ENST00000389641 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.32□□□□□ -0.281e-7■■■■□ 20.6
CCDC57-202ENST00000389641 NIPBLQ6KC79 2804 aaeCLIP9.55□□□□□ -0.882e-6■■■■□ 19.3
CCDC57-202ENST00000389641 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.6■□□□□ 0.256e-6■■■□□ 19.1
CCDC57-202ENST00000389641 AQRO60306 1485 aaKnown RBP eCLIP18.2■□□□□ 0.51e-6■■■□□ 18.3
CCDC57-202ENST00000389641 LSM11P83369 360 aaKnown RBP eCLIP12.81□□□□□ -0.364e-6■■■□□ 18.2
CCDC57-202ENST00000389641 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.76■□□□□ 0.111e-6■■■□□ 18.1
CCDC57-202ENST00000389641 FUSP35637 526 aaKnown RBP eCLIP9.06□□□□□ -0.962e-6■■■□□ 17.9
CCDC57-202ENST00000389641 EIF3HO15372 352 aaKnown RBP eCLIP15.16■□□□□ 0.028e-7■■■□□ 17.7
CCDC57-202ENST00000389641 SFPQP23246 707 aaKnown RBP eCLIP15.72■□□□□ 0.113e-7■■■□□ 17.4
CCDC57-202ENST00000389641 EWSR1Q01844 656 aaKnown RBP eCLIP11.78□□□□□ -0.523e-6■■■□□ 17.2
CCDC57-202ENST00000389641 EIF4G2P78344 907 aaKnown RBP eCLIP18.27■□□□□ 0.513e-7■■■□□ 16.9
CCDC57-202ENST00000389641 HNRNPKP61978 463 aaKnown RBP eCLIP11.59□□□□□ -0.551e-6■■■□□ 16.5
CCDC57-202ENST00000389641 LARP4Q71RC2 724 aaKnown RBP eCLIP13.45□□□□□ -0.261e-7■■■□□ 16.3
CCDC57-202ENST00000389641 PPIGQ13427 754 aaKnown RBP eCLIP12.99□□□□□ -0.331e-6■■■□□ 16.2
CCDC57-202ENST00000389641 NONOQ15233 471 aaKnown RBP eCLIP14.58□□□□□ -0.076e-7■■■□□ 15.6
CCDC57-202ENST00000389641 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.01□□□□□ -0.016e-7■■■□□ 14.9
CCDC57-202ENST00000389641 RBM22Q9NW64 420 aaKnown RBP eCLIP13.28□□□□□ -0.286e-7■■■□□ 14.8
CCDC57-202ENST00000389641 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.67□□□□□ -0.062e-7■■□□□ 14.2
CCDC57-202ENST00000389641 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.18■□□□□ 0.342e-9■■□□□ 14
CCDC57-202ENST00000389641 SAFB2Q14151 953 aaKnown RBP eCLIP16.52■□□□□ 0.234e-7■■□□□ 12.2
CCDC57-202ENST00000389641 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.91□□□□□ -0.53e-6■■□□□ 11.9
CCDC57-202ENST00000389641 EFTUD2Q15029 972 aaKnown RBP eCLIP14.24□□□□□ -0.131e-8■□□□□ 11.3
CCDC57-202ENST00000389641 SRSF1Q07955 248 aaKnown RBP eCLIP10.47□□□□□ -0.731e-6■□□□□ 10.7
CCDC57-202ENST00000389641 ZNF622Q969S3 477 aaKnown RBP eCLIP15.05■□□□□ -03e-8■□□□□ 10.2
CCDC57-202ENST00000389641 TIA1P31483 386 aaKnown RBP eCLIP12.7□□□□□ -0.385e-7■□□□□ 10
CCDC57-202ENST00000389641 PUM1Q14671 1186 aaKnown RBP eCLIP12.79□□□□□ -0.362e-11■□□□□ 9.7
CCDC57-202ENST00000389641 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.09□□□□□ -0.153e-8■□□□□ 9.6
CCDC57-202ENST00000389641 SRSF9Q13242 221 aaKnown RBP eCLIP10.43□□□□□ -0.745e-7■□□□□ 9.5
CCDC57-202ENST00000389641 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.03■□□□□ 0.489e-7■□□□□ 9.5
CCDC57-202ENST00000389641 HLTFQ14527 1009 aaKnown RBP eCLIP14.92□□□□□ -0.027e-6■□□□□ 9.4
CCDC57-202ENST00000389641 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.7□□□□□ -0.064e-7■□□□□ 8.8
Retrieved 61 of 61 RNA–protein pairs in 13.1 ms