RNA–Protein interactions for RNA: YDL122W

UBP1, Transcript of Ubiquitin-specific protease, yeast

Gene UBP1, Length 2,430 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP1	YDL122W	YRF1-4	O13559	1382 aa		3.37	□□□□□ -1.87
UBP1	YDL122W	FBP1	P09201	348 aa		3.37	□□□□□ -1.87
UBP1	YDL122W	NAP1	P25293	417 aa	Known RBP	3.37	□□□□□ -1.87
UBP1	YDL122W	CLA4	P48562	842 aa		3.37	□□□□□ -1.87
UBP1	YDL122W	TUM1	Q08686	304 aa	Known RBP	3.37	□□□□□ -1.87
UBP1	YDL122W	PAM1	P37304	830 aa	Known RBP	3.36	□□□□□ -1.87
UBP1	YDL122W	PEX29	Q03370	554 aa		3.36	□□□□□ -1.87
UBP1	YDL122W	ATG20	Q07528	640 aa		3.36	□□□□□ -1.87
UBP1	YDL122W	RAD4	P14736	754 aa		3.36	□□□□□ -1.87
UBP1	YDL122W	RSC30	P38781	883 aa		3.36	□□□□□ -1.87
UBP1	YDL122W	MSB3	P48566	633 aa	Predicted RBP	3.36	□□□□□ -1.87
UBP1	YDL122W	RIM15	P43565	1770 aa		3.36	□□□□□ -1.87
UBP1	YDL122W	AMS1	P22855	1083 aa		3.35	□□□□□ -1.87
UBP1	YDL122W	FIG2	P25653	1609 aa		3.35	□□□□□ -1.87
UBP1	YDL122W	CHZ1	P40019	153 aa	Predicted RBP	3.35	□□□□□ -1.87
UBP1	YDL122W	SHC1	P39000	512 aa		3.34	□□□□□ -1.87
UBP1	YDL122W	CWH41	P53008	833 aa		3.34	□□□□□ -1.87
UBP1	YDL122W	NST1	P53935	1240 aa		3.34	□□□□□ -1.87
UBP1	YDL122W	SAS10	Q12136	610 aa	Predicted RBP	3.34	□□□□□ -1.87
UBP1	YDL122W	ADE6	P38972	1358 aa	Known RBP	3.34	□□□□□ -1.87
UBP1	YDL122W	PTC2	P39966	464 aa	Known RBP	3.34	□□□□□ -1.87
UBP1	YDL122W	BNI4	P53858	892 aa		3.34	□□□□□ -1.87
UBP1	YDL122W	YIL177C	P40434	1758 aa		3.33	□□□□□ -1.88
UBP1	YDL122W	YJL225C	P40889	1758 aa		3.33	□□□□□ -1.88
UBP1	YDL122W	HVG1	P0CE11	249 aa		3.33	□□□□□ -1.88
UBP1	YDL122W	YNR014W	P53719	212 aa		3.33	□□□□□ -1.88
UBP1	YDL122W	MEC3	Q02574	474 aa		3.33	□□□□□ -1.88
UBP1	YDL122W	FRK1	Q03002	865 aa	Predicted RBP	3.33	□□□□□ -1.88
UBP1	YDL122W	SLM3	Q12093	417 aa		3.33	□□□□□ -1.88
UBP1	YDL122W	CPS1	P27614	576 aa		3.33	□□□□□ -1.88
UBP1	YDL122W	AI4	P03878	556 aa		3.32	□□□□□ -1.88
UBP1	YDL122W	WHI3	P34761	661 aa	Known RBP	3.32	□□□□□ -1.88
UBP1	YDL122W	SOL3	P38858	249 aa		3.32	□□□□□ -1.88
UBP1	YDL122W	ALD4	P46367	519 aa	Known RBP	3.32	□□□□□ -1.88
UBP1	YDL122W	CAB1	Q04430	367 aa		3.32	□□□□□ -1.88
UBP1	YDL122W	YPR117W	Q06116	2489 aa		3.32	□□□□□ -1.88
UBP1	YDL122W	MPH3	P0CE00	602 aa		3.32	□□□□□ -1.88
UBP1	YDL122W	HAP5	Q02516	242 aa		3.32	□□□□□ -1.88
UBP1	YDL122W	MTC5	Q03897	1148 aa		3.32	□□□□□ -1.88
UBP1	YDL122W	PFF1	P38244	976 aa		3.31	□□□□□ -1.88
UBP1	YDL122W	PEA2	P40091	420 aa		3.3	□□□□□ -1.88
UBP1	YDL122W	MID1	P41821	548 aa		3.3	□□□□□ -1.88
UBP1	YDL122W	CWC15	Q03772	175 aa	Known RBP	3.3	□□□□□ -1.88
UBP1	YDL122W	MOT2	P34909	587 aa	Known RBP	3.3	□□□□□ -1.88
UBP1	YDL122W	YGR273C	P53329	174 aa		3.3	□□□□□ -1.88
UBP1	YDL122W	TIM50	Q02776	476 aa		3.3	□□□□□ -1.88
UBP1	YDL122W	ATG13	Q06628	738 aa		3.29	□□□□□ -1.88
UBP1	YDL122W	TOP1	P04786	769 aa		3.29	□□□□□ -1.88
UBP1	YDL122W	GRX1	P25373	110 aa	Known RBP	3.29	□□□□□ -1.88
UBP1	YDL122W	XKS1	P42826	600 aa		3.29	□□□□□ -1.88
UBP1	YDL122W	BRE2	P43132	505 aa		3.29	□□□□□ -1.88
UBP1	YDL122W	RAV1	P47104	1357 aa		3.28	□□□□□ -1.88
UBP1	YDL122W	SIR4	P11978	1358 aa		3.28	□□□□□ -1.88
UBP1	YDL122W	CUP1-1	P0CX80	61 aa		3.28	□□□□□ -1.89
UBP1	YDL122W	CUP1-2	P0CX81	61 aa		3.28	□□□□□ -1.89
UBP1	YDL122W	APE3	P37302	537 aa	Known RBP	3.28	□□□□□ -1.89
UBP1	YDL122W	YFL040W	P43562	540 aa		3.28	□□□□□ -1.89
UBP1	YDL122W	RRT6	P53117	311 aa	Predicted RBP	3.28	□□□□□ -1.89
UBP1	YDL122W	GRX6	Q12438	231 aa		3.28	□□□□□ -1.89
UBP1	YDL122W	FAS2	P19097	1887 aa	Known RBP	3.27	□□□□□ -1.89
UBP1	YDL122W	ILV3	P39522	585 aa	Known RBP	3.27	□□□□□ -1.89
UBP1	YDL122W	ERO1	Q03103	563 aa		3.27	□□□□□ -1.89
UBP1	YDL122W	GAP1	P19145	602 aa	Predicted RBP	3.27	□□□□□ -1.89
UBP1	YDL122W	SET1	P38827	1080 aa	Known RBP	3.27	□□□□□ -1.89
UBP1	YDL122W	CSR2	Q12734	1121 aa		3.27	□□□□□ -1.89
UBP1	YDL122W	MSM1	P22438	575 aa		3.26	□□□□□ -1.89
UBP1	YDL122W	PAH1	P32567	862 aa		3.26	□□□□□ -1.89
UBP1	YDL122W	AIM7	Q12156	149 aa		3.26	□□□□□ -1.89
UBP1	YDL122W	PRP43	P53131	767 aa	Known RBP	3.25	□□□□□ -1.89
UBP1	YDL122W	GCR2	Q01722	534 aa		3.25	□□□□□ -1.89
UBP1	YDL122W	RIX7	Q07844	837 aa	Known RBP	3.25	□□□□□ -1.89
UBP1	YDL122W	NUM1	Q00402	2748 aa		3.24	□□□□□ -1.89
UBP1	YDL122W	FET4	P40988	552 aa		3.24	□□□□□ -1.89
UBP1	YDL122W	EMP47	P43555	445 aa		3.24	□□□□□ -1.89
UBP1	YDL122W	YKU70	P32807	602 aa		3.24	□□□□□ -1.89
UBP1	YDL122W	ZDS2	P54786	942 aa		3.24	□□□□□ -1.89
UBP1	YDL122W	FIR1	P40020	876 aa		3.23	□□□□□ -1.89
UBP1	YDL122W	MPC54	Q08550	464 aa		3.23	□□□□□ -1.89
UBP1	YDL122W	KEX1	P09620	729 aa		3.23	□□□□□ -1.89
UBP1	YDL122W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	3.23	□□□□□ -1.89	not detected
UBP1	YDL122W	RBA50	Q04418	439 aa		3.23	□□□□□ -1.89
UBP1	YDL122W	TOR1	P35169	2470 aa		3.22	□□□□□ -1.89
UBP1	YDL122W	ICL1	P28240	557 aa	Predicted RBP	3.22	□□□□□ -1.89
UBP1	YDL122W	SMY1	P32364	656 aa	Known RBP	3.22	□□□□□ -1.89
UBP1	YDL122W	MSC7	P38694	644 aa		3.22	□□□□□ -1.89
UBP1	YDL122W	GSC2	P40989	1895 aa		3.22	□□□□□ -1.89
UBP1	YDL122W	RCM1	P53972	490 aa		3.22	□□□□□ -1.89
UBP1	YDL122W	FMP30	Q02883	468 aa		3.22	□□□□□ -1.89
UBP1	YDL122W	DPL1	Q05567	589 aa		3.22	□□□□□ -1.89
UBP1	YDL122W	ECM30	Q06673	1274 aa		3.22	□□□□□ -1.89
UBP1	YDL122W	YLL067C	Q07888	1374 aa		3.21	□□□□□ -1.9
UBP1	YDL122W	UBP14	P38237	781 aa	Known RBP	3.21	□□□□□ -1.9
UBP1	YDL122W	YHR131C	P38835	850 aa		3.21	□□□□□ -1.9
UBP1	YDL122W	YLR225C	Q05948	407 aa	Known RBP	3.21	□□□□□ -1.9
UBP1	YDL122W	RTC1	Q08281	1341 aa		3.21	□□□□□ -1.9
UBP1	YDL122W	LDH1	P38139	375 aa		3.21	□□□□□ -1.9
UBP1	YDL122W	PAF1	P38351	445 aa		3.21	□□□□□ -1.9
UBP1	YDL122W	RPN1	P38764	993 aa	Known RBP	3.21	□□□□□ -1.9
UBP1	YDL122W	NMA111	P53920	997 aa		3.21	□□□□□ -1.9
UBP1	YDL122W	DMA2	P53924	522 aa		3.21	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 43 ms