RNA–Protein interactions for RNA: YDL122W

UBP1, Transcript of Ubiquitin-specific protease, yeast

Gene UBP1, Length 2,430 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP1	YDL122W	FAP1	P53971	965 aa		7.36	□□□□□ -1.23
UBP1	YDL122W	PRY3	P47033	881 aa		6.99	□□□□□ -1.29
UBP1	YDL122W	YCK3	P39962	524 aa		6.55	□□□□□ -1.36
UBP1	YDL122W	HAA1	Q12753	694 aa	Known RBP	6.49	□□□□□ -1.37
UBP1	YDL122W	AAD16	Q02895	342 aa		6.32	□□□□□ -1.4
UBP1	YDL122W	MTC1	P47018	478 aa	Known RBP	6.27	□□□□□ -1.41
UBP1	YDL122W	PRI1	P10363	409 aa		6.15	□□□□□ -1.43
UBP1	YDL122W	MON2	P48563	1636 aa	Predicted RBP	6.09	□□□□□ -1.43
UBP1	YDL122W	INO80	P53115	1489 aa		6.01	□□□□□ -1.45
UBP1	YDL122W	BUD31	P25337	157 aa	Predicted RBP	5.94	□□□□□ -1.46
UBP1	YDL122W	RSE1	Q04693	1361 aa	Known RBP	5.79	□□□□□ -1.48
UBP1	YDL122W	YGL015C	P33199	130 aa		5.73	□□□□□ -1.49
UBP1	YDL122W	TSR3	Q12094	313 aa	Known RBP	5.72	□□□□□ -1.49
UBP1	YDL122W	DNA2	P38859	1522 aa		5.71	□□□□□ -1.5
UBP1	YDL122W	KOG1	P38873	1557 aa		5.67	□□□□□ -1.5
UBP1	YDL122W	SWR1	Q05471	1514 aa		5.54	□□□□□ -1.52
UBP1	YDL122W	ISW2	Q08773	1120 aa		5.54	□□□□□ -1.52
UBP1	YDL122W	MRPL32	P25348	183 aa		5.52	□□□□□ -1.53
UBP1	YDL122W	SPA2	P23201	1466 aa	Known RBP	5.51	□□□□□ -1.53
UBP1	YDL122W	RPG1	P38249	964 aa	Known RBP	5.51	□□□□□ -1.53
UBP1	YDL122W	SIS1	P25294	352 aa	Known RBP	5.5	□□□□□ -1.53
UBP1	YDL122W	DRS1	P32892	752 aa	Known RBP	5.34	□□□□□ -1.55
UBP1	YDL122W	MIF2	P35201	549 aa		5.33	□□□□□ -1.56
UBP1	YDL122W	TY1B-DR4	Q07793	1604 aa		5.29	□□□□□ -1.56
UBP1	YDL122W	TCB3	Q03640	1545 aa	Known RBP	5.28	□□□□□ -1.56
UBP1	YDL122W	UBP9	P39967	754 aa		5.17	□□□□□ -1.58
UBP1	YDL122W	REV3	P14284	1504 aa		5.08	□□□□□ -1.6
UBP1	YDL122W	THO2	P53552	1597 aa	Known RBP	5.07	□□□□□ -1.6
UBP1	YDL122W	UBP10	P53874	792 aa	Predicted RBP	5.04	□□□□□ -1.6
UBP1	YDL122W	YFR006W	P43590	535 aa		5.02	□□□□□ -1.61
UBP1	YDL122W	ECM5	Q03214	1411 aa		5.01	□□□□□ -1.61
UBP1	YDL122W	MDS3	P53094	1487 aa		5	□□□□□ -1.61
UBP1	YDL122W	BUD4	P47136	1447 aa		4.99	□□□□□ -1.61
UBP1	YDL122W	MAP2	P38174	421 aa	Known RBP	4.97	□□□□□ -1.61
UBP1	YDL122W	SPT6	P23615	1451 aa	Known RBP	4.96	□□□□□ -1.62
UBP1	YDL122W	CDC27	P38042	758 aa		4.95	□□□□□ -1.62
UBP1	YDL122W	HSL1	P34244	1518 aa		4.95	□□□□□ -1.62
UBP1	YDL122W	PEP1	P32319	1579 aa		4.93	□□□□□ -1.62
UBP1	YDL122W	BPT1	P14772	1559 aa		4.92	□□□□□ -1.62
UBP1	YDL122W	MYO2	P19524	1574 aa	Known RBP	4.86	□□□□□ -1.63
UBP1	YDL122W	TGL3	P40308	642 aa		4.85	□□□□□ -1.63
UBP1	YDL122W	LTE1	P07866	1435 aa		4.85	□□□□□ -1.63
UBP1	YDL122W	TIF4632	P39936	914 aa	Known RBP	4.84	□□□□□ -1.64
UBP1	YDL122W	YCF1	P39109	1515 aa	Known RBP	4.84	□□□□□ -1.64
UBP1	YDL122W	DNF1	P32660	1571 aa		4.82	□□□□□ -1.64
UBP1	YDL122W	HIR3	P47171	1648 aa		4.81	□□□□□ -1.64
UBP1	YDL122W	ABP1	P15891	592 aa	Known RBP	4.78	□□□□□ -1.64
UBP1	YDL122W	MET5	P47169	1442 aa		4.78	□□□□□ -1.64
UBP1	YDL122W	IRC20	Q06554	1556 aa		4.77	□□□□□ -1.65
UBP1	YDL122W	RPA190	P10964	1664 aa	Known RBP	4.75	□□□□□ -1.65
UBP1	YDL122W	ESC1	Q03661	1658 aa	Known RBP	4.75	□□□□□ -1.65
UBP1	YDL122W	SSK2	P53599	1579 aa		4.75	□□□□□ -1.65
UBP1	YDL122W	CDC25	P04821	1589 aa		4.75	□□□□□ -1.65
UBP1	YDL122W	BNI1	P41832	1953 aa		4.75	□□□□□ -1.65
UBP1	YDL122W	ATG2	P53855	1592 aa		4.73	□□□□□ -1.65
UBP1	YDL122W	GEA2	P39993	1459 aa	Known RBP	4.72	□□□□□ -1.65
UBP1	YDL122W	TAF2	P23255	1407 aa		4.71	□□□□□ -1.66
UBP1	YDL122W	DIP2	Q12220	943 aa	Predicted RBP	4.7	□□□□□ -1.66
UBP1	YDL122W	SGS1	P35187	1447 aa		4.69	□□□□□ -1.66
UBP1	YDL122W	REB1	P21538	810 aa		4.69	□□□□□ -1.66
UBP1	YDL122W	MMS1	Q06211	1407 aa		4.69	□□□□□ -1.66
UBP1	YDL122W	RPO31	P04051	1460 aa		4.65	□□□□□ -1.67
UBP1	YDL122W	SLX5	P32828	619 aa	Known RBP	4.65	□□□□□ -1.67
UBP1	YDL122W	RGA2	Q06407	1009 aa		4.65	□□□□□ -1.67
UBP1	YDL122W	RKR1	Q04781	1562 aa		4.64	□□□□□ -1.67
UBP1	YDL122W	YOR093C	Q12275	1648 aa		4.61	□□□□□ -1.67
UBP1	YDL122W	YBL029C-A	Q3E756	94 aa		4.61	□□□□□ -1.67
UBP1	YDL122W	ITT1	Q04638	464 aa		4.61	□□□□□ -1.67
UBP1	YDL122W	YJL171C	P46992	396 aa		4.6	□□□□□ -1.67
UBP1	YDL122W	SCY1	P53009	804 aa		4.6	□□□□□ -1.67
UBP1	YDL122W	XRN1	P22147	1528 aa	Known RBP	4.59	□□□□□ -1.67
UBP1	YDL122W	DNF2	Q12675	1612 aa		4.58	□□□□□ -1.68
UBP1	YDL122W	RPL17A	P05740	184 aa	Known RBP	4.58	□□□□□ -1.68
UBP1	YDL122W	RPL17B	P46990	184 aa	Known RBP	4.58	□□□□□ -1.68
UBP1	YDL122W	YKR023W	P36119	530 aa	Known RBP	4.56	□□□□□ -1.68
UBP1	YDL122W	AIR2	Q12476	344 aa	Known RBP	4.56	□□□□□ -1.68
UBP1	YDL122W	DRS2	P39524	1355 aa		4.56	□□□□□ -1.68
UBP1	YDL122W	AVT3	P36062	692 aa		4.54	□□□□□ -1.68
UBP1	YDL122W	CHD1	P32657	1468 aa		4.53	□□□□□ -1.68
UBP1	YDL122W	ESP1	Q03018	1630 aa		4.52	□□□□□ -1.69
UBP1	YDL122W	SKI3	P17883	1432 aa	Known RBP	4.51	□□□□□ -1.69
UBP1	YDL122W	SIN3	P22579	1536 aa		4.51	□□□□□ -1.69
UBP1	YDL122W	VNX1	P42839	908 aa		4.51	□□□□□ -1.69
UBP1	YDL122W	UFD4	P33202	1483 aa		4.49	□□□□□ -1.69
UBP1	YDL122W	FKH1	P40466	484 aa		4.49	□□□□□ -1.69
UBP1	YDL122W	TFC8	Q12308	588 aa		4.47	□□□□□ -1.69
UBP1	YDL122W	PAN1	P32521	1480 aa		4.47	□□□□□ -1.69
UBP1	YDL122W	DCD1	P06773	312 aa		4.47	□□□□□ -1.69
UBP1	YDL122W	MST1	P07236	462 aa		4.47	□□□□□ -1.69
UBP1	YDL122W	YPK9	Q12697	1472 aa		4.46	□□□□□ -1.69
UBP1	YDL122W	HO	P09932	586 aa		4.46	□□□□□ -1.7
UBP1	YDL122W	SPP1	Q03012	353 aa		4.46	□□□□□ -1.7
UBP1	YDL122W	NTE1	Q04958	1679 aa		4.46	□□□□□ -1.7
UBP1	YDL122W	VPS15	P22219	1454 aa		4.44	□□□□□ -1.7
UBP1	YDL122W	BFR2	Q06631	534 aa	Known RBP	4.44	□□□□□ -1.7
UBP1	YDL122W	TY1B-BR	Q12193	1756 aa		4.43	□□□□□ -1.7
UBP1	YDL122W	TY1B-GR3	Q12316	1755 aa		4.43	□□□□□ -1.7
UBP1	YDL122W	TY1B-OR	Q92393	1755 aa		4.43	□□□□□ -1.7
UBP1	YDL122W	BMT6	Q12291	365 aa		4.41	□□□□□ -1.7
UBP1	YDL122W	SCC2	Q04002	1493 aa		4.4	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 16.1 ms